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Report for CCDS11140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11140.1 Public Homo sapiens 17 ODF4 24 110 108 CCDS HistoryNCBI Gene:146852Re-query CCDS DB by CCDS ID:11140.1Re-query CCDS DB by GeneID:146852See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11140.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328248.7 ENSP00000331086.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328248.7Link to Ensembl Protein Viewer:ENSP00000331086.2Re-query CCDS DB by Nucleotide ID:ENST00000328248Re-query CCDS DB by Protein ID:ENSP00000331086
Original member Current member NCBI NM_153007.5 NP_694552.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153007.5Link to Protein Sequence:NP_694552.2Re-query CCDS DB by Nucleotide ID:NM_153007Re-query CCDS DB by Protein ID:NP_694552Link to BLAST:NP_694552.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694552.2 257 Q2M2E3 257 100% 0 0

Chromosomal Locations for CCDS 11140.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8340052 8340505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8345343 8345477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8345668 8345852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGATGCAGAGTACTCTGGGAATGAGTTCCCCAGGTCAGAAGGAGAAAGAGACCAACATCAGAGACCTG
GAAAGGAAAGGAAGAGTGGGGAGGCAGGATGGGGCACAGGTGAGCTGGGACAAGATGGGAGACTGCTGTC
CTCCACCCTCTCCCTCAGTAGTAACAGGTCCTTGGGCCAGCGCCAGAACTCTCCGCTGCCCTTTCAATGG
AGAATCACACACAGCTTCCGCTGGATGGCCCAGGTGTTGGCCTCTGAGCTCAGCCTGGTTGCCTTTATCC
TACTATTGGTCGTGGCCTTCTCCAAGAAATGGCTGGACCTCTCTAGGAGCCTCTTCTACCAGCGCTGGCC
CGTGGATGTCAGCAACAGAATCCACACATCAGCCCACGTTATGTCCATGGGGCTCCTGCACTTTTACAAA
TCCAGGAGCTGTTCTGACTTAGAGAATGGGAAAGTCACCTTCATCTTCTCCACCCTCATGCTATTCCCCA
TTAACATCTGGATCTTCGAGTTGGAAAGGAATGTATCCATCCCCATAGGCTGGAGCTATTTCATTGGTTG
GCTGGTGCTTATCCTATACTTCACCTGCGCGATCCTTTGCTACTTCAACCATAAAAGTTTCTGGAGTCTG
ATTCTGAGCCACCCCAGTGGTGCCGTGTCCTGCAGCAGCAGTTTCGGCTCAGTAGAAGAATCTCCAAGGG
CACAGACGATCACAGACACCCCCATCACCCAGGAGGGAGTCCTGGATCCTGAGCAGAAGGATACACATGT
GTAA

Translation (257 aa):
MDAEYSGNEFPRSEGERDQHQRPGKERKSGEAGWGTGELGQDGRLLSSTLSLSSNRSLGQRQNSPLPFQW
RITHSFRWMAQVLASELSLVAFILLLVVAFSKKWLDLSRSLFYQRWPVDVSNRIHTSAHVMSMGLLHFYK
SRSCSDLENGKVTFIFSTLMLFPINIWIFELERNVSIPIGWSYFIGWLVLILYFTCAILCYFNHKSFWSL
ILSHPSGAVSCSSSFGSVEESPRAQTITDTPITQEGVLDPEQKDTHV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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