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Report for CCDS25748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25748.1 Public Mus musculus 11 Mafg 23 108 98 CCDS HistoryNCBI Gene:17134Re-query CCDS DB by CCDS ID:25748.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058162.13 ENSMUSP00000053899.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058162.13Link to Ensembl Protein Viewer:ENSMUSP00000053899.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058162Re-query CCDS DB by Protein ID:ENSMUSP00000053899
Original member Current member EBI ENSMUST00000106180.1 ENSMUSP00000101786.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106180.1Link to Ensembl Protein Viewer:ENSMUSP00000101786.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106180Re-query CCDS DB by Protein ID:ENSMUSP00000101786
Original member Current member EBI ENSMUST00000106181.7 ENSMUSP00000101787.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106181.7Link to Ensembl Protein Viewer:ENSMUSP00000101787.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106181Re-query CCDS DB by Protein ID:ENSMUSP00000101787
Original member Current member EBI ENSMUST00000106182.7 ENSMUSP00000101788.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106182.7Link to Ensembl Protein Viewer:ENSMUSP00000101788.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106182Re-query CCDS DB by Protein ID:ENSMUSP00000101788
Original member Current member NCBI NM_010756.3 NP_034886.1 Accepted alive Link to Nucleotide Sequence:NM_010756.3Link to Protein Sequence:NP_034886.1Re-query CCDS DB by Nucleotide ID:NM_010756Re-query CCDS DB by Protein ID:NP_034886Link to BLAST:NP_034886.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034886.1 162 O54790 162 100% 0 0

Chromosomal Locations for CCDS 25748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120629284 120629736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120629818 120629853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGACGACCCCCAATAAAGGAAACAAGGCCTTAAAGGTGAAGCGGGAGCCAGGCGAGAATGGCACCAGCT
TGACCGACGAGGAGCTGGTAACCATGTCGGTGCGAGAGTTGAACCAGCACCTGCGAGGCCTCTCCAAGGA
AGAGATCATCCAGCTGAAGCAGCGGAGGCGCACACTGAAGAACCGGGGCTACGCGGCCAGCTGCCGCGTC
AAGCGGGTGACACAGAAGGAGGAGCTGGAGAAGCAGAAGGCGGAGCTCCAGCAGGAGGTGGAGAAGCTGG
CCTCGGAGAATGCCAGCATGAAGCTGGAGCTCGATGCCCTGCGCTCCAAGTACGAGGCCCTGCAGAACTT
TGCCAGGACCGTGGCCCGCAGCCCTGTGGCCCCAGCTCGGGGTCCCCTTGCTGCTGGCCTGGGGCCCCTG
GTTCCTGGCAAGGTGGCTGCCACCAGCGTCATCACAATAGTAAAGTCCAAGACGGATGCTCGGTCATAG

Translation (162 aa):
MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIIQLKQRRRTLKNRGYAASCRV
KRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQNFARTVARSPVAPARGPLAAGLGPL
VPGKVAATSVITIVKSKTDARS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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