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Report for CCDS43519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43519.1 Public Homo sapiens 6 TMEM242 24 110 108 CCDS HistoryNCBI Gene:729515Re-query CCDS DB by CCDS ID:43519.1Re-query CCDS DB by GeneID:729515See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43519.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400788.9 ENSP00000383594.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400788.9Link to Ensembl Protein Viewer:ENSP00000383594.3Re-query CCDS DB by Nucleotide ID:ENST00000400788Re-query CCDS DB by Protein ID:ENSP00000383594
Original member Current member NCBI NM_018452.6 NP_060922.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018452.6Link to Protein Sequence:NP_060922.2Re-query CCDS DB by Nucleotide ID:NM_018452Re-query CCDS DB by Protein ID:NP_060922Link to BLAST:NP_060922.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060922.2 141 Q9NWH2 141 100% 0 0

Chromosomal Locations for CCDS 43519.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 157292901 157292999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 157318782 157318919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 157322705 157322805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 157323412 157323499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (426 nt):
ATGGAGACAGCGGGCGCTGCAACTGGGCAGCCGGCCTCTGGGCTGGAGGCTCCGGGGTCCACGAATGACC
GGCTTTTCCTGGTTAAAGGTGGAATTTTCCTTGGTACCGTTGCTGCAGCGGGAATGCTAGCTGGATTTAT
TACAACATTATCATTGGCTAAAAAGAAAAGCCCTGAATGGTTCAATAAGGGAAGTATGGCCACGGCTGCA
TTACCGGAAAGCGGGTCTTCCCTTGCCTTGCGAGCTCTGGGCTGGGGCTCCCTGTATGCATGGTGTGGGG
TTGGTGTGATTAGCTTCGCAGTCTGGAAAGCTTTAGGAGTTCACAGTATGAACGACTTTCGAAGTAAAAT
GCAATCAATATTTCCAACAATTCCCAAGAACTCCGAATCGGCTGTTGAGTGGGAGGAAACATTGAAATCC
AAATGA

Translation (141 aa):
METAGAATGQPASGLEAPGSTNDRLFLVKGGIFLGTVAAAGMLAGFITTLSLAKKKSPEWFNKGSMATAA
LPESGSSLALRALGWGSLYAWCGVGVISFAVWKALGVHSMNDFRSKMQSIFPTIPKNSESAVEWEETLKS
K


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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