NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5569.1 Public Homo sapiens 7 CLIP2 24 110 108 CCDS HistoryNCBI Gene:7461Re-query CCDS DB by CCDS ID:5569.1Re-query CCDS DB by GeneID:7461See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5569.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000223398.11 ENSP00000223398.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000223398.11Link to Ensembl Protein Viewer:ENSP00000223398.6Re-query CCDS DB by Nucleotide ID:ENST00000223398Re-query CCDS DB by Protein ID:ENSP00000223398
Original member Current member NCBI NM_003388.5 NP_003379.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003388.5Link to Protein Sequence:NP_003379.4Re-query CCDS DB by Nucleotide ID:NM_003388Re-query CCDS DB by Protein ID:NP_003379Link to BLAST:NP_003379.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003379.4 1046 Q9UDT6-1 1046 100% 0 0

Chromosomal Locations for CCDS 5569.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 74317547 74317667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74338448 74339004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74353880 74354004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74356410 74356623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74357280 74357477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74360175 74360278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74364255 74364315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74372932 74373036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74375887 74376822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74380806 74380863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74386521 74386604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74389103 74389259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74397074 74397233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74400370 74400555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74401505 74401567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74403837 74403848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3141 nt):
ATGCAGAAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTCCAGCCCCATGGGCCGGACAT
CTACTGGGTCAGCTTCATCCTCGGCGGCGGTGGCCGCTAGCTCCAAGGAAGGCTCCCCACTGCACAAACA
GTCATCTGGACCCTCCTCCTCCCCGGCCGCAGCTGCTGCCCCCGAGAAGCCGGGCCCCAAGGCGGCGGAA
GTGGGGGATGACTTCCTGGGGGACTTTGTGGTGGGCGAGCGGGTGTGGGTGAACGGCGTGAAGCCAGGCG
TGGTGCAGTATCTGGGAGAGACGCAGTTCGCACCGGGCCAGTGGGCTGGCGTGGTGCTGGACGACCCGGT
GGGCAAGAATGATGGCGCGGTGGGCGGCGTGCGCTACTTCGAGTGCCCGGCCCTCCAGGGTATCTTCACG
CGGCCCTCCAAGCTGACCCGGCAGCCCACGGCCGAGGGCTCGGGGAGTGATGCCCACTCCGTGGAGTCGC
TGACTGCCCAGAACCTGTCATTGCATTCGGGCACGGCCACGCCCCCGCTGACCAGCCGCGTCATCCCCCT
GCGGGAGAGCGTCCTCAACAGCTCCGTGAAGACTGGCAACGAGTCGGGATCCAACCTCTCAGACAGCGGC
TCTGTGAAGCGGGGCGAAAAGGACCTGCGCCTGGGGGACCGCGTGCTGGTTGGCGGGACGAAGACTGGCG
TGGTGCGGTACGTGGGGGAGACAGACTTTGCCAAGGGCGAGTGGTGTGGCGTGGAGCTGGACGAGCCCCT
TGGGAAGAATGATGGGGCGGTGGCGGGCACCAGGTACTTCCAGTGCCCACCCAAGTTTGGTCTCTTCGCG
CCCATCCACAAAGTGATCCGTATCGGCTTCCCATCTACCAGCCCAGCCAAGGCCAAGAAGACCAAGCGTA
TGGCCATGGGTGTGTCAGCACTGACCCACAGTCCCAGCAGTTCCTCCATCAGCTCCGTCAGCTCTGTGGC
CTCCTCCGTGGGGGGTCGGCCCAGCCGCAGTGGCCTGCTCACGGAGACCTCTTCACGCTACGCCCGCAAG
ATCTCGGGCACCACGGCCTTGCAGGAGGCACTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGGCTG
AACGAGACCTGGAACGGGCTGAGGTGGCCAAGGCCACAAGCCACATCTGCGAGGTGGAGAAGGAGATTGC
CCTGCTCAAGGCACAGCATGAGCAGTATGTTGCAGAAGCCGAGGAGAAGCTGCAGCGAGCCCGGCTGCTC
GTGGAGAGCGTGCGGAAAGAGAAGGTGGACCTGTCCAACCAGCTGGAGGAGGAGAGGAGGAAGGTGGAGG
ATCTGCAGTTCCGCGTGGAGGAGGAGTCCATCACCAAGGGAGACCTGGAGACCCAGACGCAGCTGGAGCA
CGCGCGCATTGGGGAGCTGGAACAGAGCCTGCTACTGGAGAAGGCGCAGGCCGAGCGGCTGCTCCGAGAA
TTAGCGGACAACAGGCTGACCACAGTGGCCGAGAAGTCGCGCGTGCTGCAGCTGGAGGAGGAGCTCACCC
TGCGCCGAGGTGAAATCGAGGAGCTCCAGCAGTGCCTGTTGCACTCGGGTCCCCCACCTCCGGACCACCC
AGACGCCGCCGAGATCCTGCGGCTACGGGAGCGGCTGCTCTCGGCCAGCAAGGAACACCAGAGGGAGAGT
GGGGTGCTGCGGGATAAATACGAGAAGGCCCTGAAGGCCTACCAGGCGGAGGTGGACAAGCTCCGCGCGG
CCAACGAGAAGTACGCACAGGAGGTGGCGGGCCTGAAGGACAAGGTTCAGCAGGCCACCAGCGAGAACAT
GGGGCTAATGGACAACTGGAAATCCAAGCTGGACTCGCTGGCCTCGGACCACCAGAAGTCCCTGGAGGAC
CTCAAAGCCACCCTGAACTCGGGCCCAGGCGCCCAGCAGAAGGAGATCGGCGAGCTGAAGGCAGTGATGG
AGGGCATCAAGATGGAGCACCAGCTGGAGCTGGGTAACTTGCAGGCCAAGCATGACCTGGAGACCGCCAT
GCACGTGAAGGAGAAGGAGGCCCTGCGAGAGAAGCTGCAGGAGGCCCAGGAGGAGCTGGCTGGGCTGCAG
CGGCACTGGCGGGCCCAGCTGGAGGTGCAAGCCAGCCAGCACCGGCTGGAGCTGCAGGAGGCCCAGGACC
AGCGCCGGGATGCCGAGCTGCGTGTGCACGAGCTGGAAAAACTGGACGTGGAGTACCGGGGCCAGGCGCA
GGCTATCGAGTTCCTCAAGGAGCAGATCTCGCTGGCCGAGAAGAAGATGTTGGACTACGAGCGGCTGCAG
CGGGCAGAAGCCCAGGGCAAACAGGAGGTCGAGAGTTTGCGGGAGAAGCTCCTGGTGGCTGAGAACAGAC
TCCAGGCGGTCGAGGCCCTGTGCTCCTCCCAGCACACCCACATGATTGAGTCGAATGACATTTCAGAGGA
GACGATCAGGACGAAGGAAACTGTGGAGGGCCTGCAGGACAAGCTGAACAAGAGGGACAAAGAGGTGACA
GCCTTGACCTCCCAGACCGAGATGCTCAGGGCCCAAGTAAGTGCGCTGGAGAGCAAGTGTAAGTCAGGCG
AGAAGAAGGTGGACGCCCTCCTGAAGGAGAAGCGGCGCCTGGAGGCAGAGCTGGAGACCGTGTCCCGGAA
GACCCATGACGCCTCGGGCCAGCTAGTCCTCATCAGCCAGGAGCTGCTGCGGAAGGAGCGGAGCCTGAAC
GAACTGCGGGTGTTGCTGCTGGAGGCCAATCGTCACTCCCCAGGGCCGGAGAGGGACCTGAGCCGTGAGG
TACACAAGGCTGAGTGGCGGATCAAGGAGCAGAAACTCAAGGATGACATCCGGGGCCTGCGTGAAAAGCT
GACCGGGCTGGACAAAGAGAAATCCCTGTCGGATCAGAGGCGCTACTCCCTCATCGACCGGTCCTCGGCG
CCCGAGCTTCTGCGGCTGCAGCACCAGCTGATGAGCACGGAGGACGCCCTGCGGGATGCGCTGGACCAGG
CTCAGCAGGTGGAGAAGCTGATGGAGGCCATGAGGAGCTGCCCTGACAAGGCCCAGACCATCGGCAATTC
CGGTTCTGCAAACGGCATCCACCAGCAGGACAAAGCTCAGAAACAAGAGGACAAGCACTGA

Translation (1046 aa):
MQKPSGLKPPGRGGKHSSPMGRTSTGSASSSAAVAASSKEGSPLHKQSSGPSSSPAAAAAPEKPGPKAAE
VGDDFLGDFVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFT
RPSKLTRQPTAEGSGSDAHSVESLTAQNLSLHSGTATPPLTSRVIPLRESVLNSSVKTGNESGSNLSDSG
SVKRGEKDLRLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFA
PIHKVIRIGFPSTSPAKAKKTKRMAMGVSALTHSPSSSSISSVSSVASSVGGRPSRSGLLTETSSRYARK
ISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLL
VESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRE
LADNRLTTVAEKSRVLQLEEELTLRRGEIEELQQCLLHSGPPPPDHPDAAEILRLRERLLSASKEHQRES
GVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLMDNWKSKLDSLASDHQKSLED
LKATLNSGPGAQQKEIGELKAVMEGIKMEHQLELGNLQAKHDLETAMHVKEKEALREKLQEAQEELAGLQ
RHWRAQLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQ
RAEAQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNDISEETIRTKETVEGLQDKLNKRDKEVT
ALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLN
ELRVLLLEANRHSPGPERDLSREVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSDQRRYSLIDRSSA
PELLRLQHQLMSTEDALRDALDQAQQVEKLMEAMRSCPDKAQTIGNSGSANGIHQQDKAQKQEDKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH