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Report for CCDS8844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8844.1 Public Homo sapiens 12 TNS2 24 110 108 CCDS HistoryNCBI Gene:23371Re-query CCDS DB by CCDS ID:8844.1Re-query CCDS DB by GeneID:23371See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 8844.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379902.7 ENSP00000369232.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379902.7Link to Ensembl Protein Viewer:ENSP00000369232.3Re-query CCDS DB by Nucleotide ID:ENST00000379902Re-query CCDS DB by Protein ID:ENSP00000369232
Original member Current member NCBI NM_198316.2 NP_938072.1 Accepted alive Link to Nucleotide Sequence:NM_198316.2Link to Protein Sequence:NP_938072.1Re-query CCDS DB by Nucleotide ID:NM_198316Re-query CCDS DB by Protein ID:NP_938072Link to BLAST:NP_938072.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_938072.1 1285 Q63HR2-5 1285 100% 0 0

Chromosomal Locations for CCDS 8844.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 53054292 53054441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53055186 53055236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53055568 53055690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53055781 53055845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53057013 53057096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53057567 53057679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53057773 53057833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53058027 53058102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53058316 53058445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53058572 53058637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53058714 53058827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53059047 53060258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53060405 53060555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53060675 53061264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53061380 53061469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53061815 53061940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53062153 53062245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53062376 53062453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53062620 53062697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53063089 53063257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53063349 53063417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53063563 53063592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53063744 53063882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3858 nt):
ATGGAGCGGCGCTGGGACTTAGACCTCACCTACGTGACGGAGCGCATCTTGGCCGCCGCCTTCCCCGCGC
GGCCCGATGAACAGCGGCACCGGGGCCACCTGCGCGAGCTGGCCCATGTGCTGCAATCCAAGCACCGGGA
CAAGTACCTGCTCTTCAACCTTTCAGAGAAAAGGCATGACCTGACCCGCTTAAACCCCAAGGTTCAAGAC
TTCGGCTGGCCTGAGCTGCATGCTCCACCCCTGGACAAGCTGTGCTCCATCTGCAAAGCCATGGAGACAT
GGCTCAGTGCTGACCCACAGCACGTGGTCGTACTATACTGCAAGGGAAACAAGGGCAAGCTTGGGGTCAT
CGTTTCTGCCTACATGCACTACAGCAAGATCTCTGCAGGGGCGGACCAGGCACTGGCCACTCTTACCATG
CGGAAATTCTGCGAGGACAAGGTGGCCACAGAACTGCAGCCCTCCCAGCGTCGATATATCAGCTACTTCA
GTGGGCTGCTATCTGGCTCCATCAGAATGAACAGCAGCCCTCTCTTCCTGCACTATGTGCTCATCCCCAT
GCTGCCAGCCTTTGAACCTGGCACAGGCTTCCAGCCCTTCCTTAAAATCTACCAGTCCATGCAGCTTGTC
TACACATCTGGAGTCTATCACATTGCAGGCCCTGGTCCCCAGCAGCTTTGCATCAGCCTGGAGCCAGCCC
TCCTCCTCAAAGGCGATGTCATGGTAACATGTTATCACAAGGGTGGCCGGGGCACAGACCGGACCCTCGT
GTTCCGAGTCCAGTTCCACACCTGCACCATCCACGGACCACAGCTCACTTTCCCCAAGGACCAGCTTGAC
GAGGCCTGGACTGATGAGAGGTTCCCCTTCCAAGCCTCCGTGGAGTTTGTCTTCTCCTCCAGCCCCGAGA
AGATCAAAGGCAGCACTCCACGGAACGACCCCTCGGTCTCTGTCGACTACAACACCACTGAGCCAGCCGT
GCGCTGGGACTCCTATGAGAACTTCAACCAGCACCACGAGGACAGTGTGGATGGCTCCTTGACCCACACC
CGGGGTCCCCTGGATGGCAGTCCTTATGCCCAGGTGCAGCGGCCTCCCCGGCAGACCCCCCCGGCACCCT
CTCCAGAGCCTCCACCACCCCCCATGCTCTCTGTCAGCAGCGACTCAGGCCATTCCTCCACGCTGACCAC
AGAGCCGGCTGCTGAGTCCCCTGGCCGGCCGCCCCCTACAGCTGCTGAACGGCAGGAGCTGGATCGCCTC
CTAGGAGGCTGCGGAGTGGCCAGTGGGGGCCGGGGAGCTGGGCGCGAGACGGCCATCCTAGATGACGAAG
AGCAGCCCACTGTGGGCGGAGGCCCCCACCTCGGAGTGTATCCAGGCCATAGGCCTGGCCTCAGCCGCCA
CTGCTCCTGCCGCCAGGGCTACCGGGAGCCCTGCGGGGTTCCCAATGGGGGCTACTACCGGCCAGAGGGA
ACCCTGGAGAGGAGGCGACTGGCCTACGGGGGCTATGAGGGATCCCCCCAGGGCTACGCCGAGGCCTCGA
TGGAGAAGAGGCGCCTCTGCCGATCGCTGTCAGAGGGGCTATACCCCTACCCACCTGAGATGGGGAAACC
AGCCACTGGGGACTTTGGCTACCGCGCCCCAGGCTACCGGGAGGTGGTCATCCTGGAGGACCCTGGGCTG
CCTGCCCTATACCCATGCCCAGCCTGCGAGGAGAAGCTGGCGCTGCCTACAGCAGCCTTGTATGGACTGC
GGCTGGAGAGGGAGGCTGGAGAAGGGTGGGCAAGTGAGGCTGGCAAGCCTCTCCTGCACCCAGTGCGGCC
TGGGCACCCGCTGCCTCTGCTCTTGCCTGCCTGTGGGCATCACCATGCCCCGATGCCTGACTACAGCTGC
CTGAAGCCACCCAAGGCAGGCGAGGAAGGGCACGAGGGCTGCTCCTACACCATGTGCCCCGAAGGCAGGT
ATGGGCATCCAGGGTACCCTGCCCTGGTGACATACAGCTATGGAGGAGCAGTTCCCAGTTACTGCCCAGC
ATATGGCCGTGTGCCTCATAGCTGTGGCTCTCCAGGAGAGGGCAGAGGGTATCCCAGCCCTGGTGCCCAC
TCCCCACGGGCTGGCTCCATTTCCCCGGGCAGCCCGCCCTATCCACAATCTAGGAAGCTGAGCTACGAGA
TCCCTACGGAGGAGGGAGGGGACAGGTACCCATTGCCTGGGCACCTGGCCTCAGCAGGACCTTTGGCATC
TGCAGAGTCGCTGGAGCCGGTGTCCTGGAGGGAGGGCCCCAGTGGGCACAGCACACTGCCTCGGTCTCCC
CGAGATGCCCCATGCAGTGCTTCGTCAGAGTTGTCTGGTCCCTCCACGCCCCTGCACACCAGCAGTCCAG
TCCAGGGCAAGGAAAGCACCCGGCGACAGGACACCAGGTCCCCCACCTCAGCGCCCACTCAGAGACTGAG
TCCTGGCGAGGCCTTGCCCCCTGTTTCCCAGGCAGGCACCGGAAAGGCCCCTGAGCTGCCGTCGGGAAGT
GGGCCTGAGCCTCTGGCCCCTAGCCCAGTCTCTCCGACCTTCCCTCCCAGCTCGCCCAGTGACTGGCCTC
AGGAAAGGAGTCCAGGGGGCCACTCAGATGGCGCCAGTCCTCGGAGCCCTGTGCCCACCACACTTCCTGG
CCTCCGCCACGCCCCCTGGCAAGGCCCTCGAGGCCCCCCCGACAGCCCAGATGGGTCTCCCCTCACTCCT
GTGCCTTCCCAGATGCCCTGGCTTGTGGCCAGCCCAGAGCCGCCTCAGAGCTCACCTACACCTGCTTTCC
CCCTGGCTGCCTCCTATGACACCAATGGCCTTAGCCAGCCCCCACTTCCTGAGAAACGCCACCTGCCCGG
GCCGGGGCAACAGCCAGGACCCTGGGGCCCAGAGCAGGCATCATCGCCAGCCAGAGGCATCAGTCACCAT
GTCACCTTCGCACCTCTGCTCTCAGATAATGTCCCCCAAACCCCAGAGCCTCCTACACAAGAGAGCCAAA
GCAATGTCAAGTTTGTCCAGGATACATCCAAGTTCTGGTACAAGCCACACCTGTCCCGTGACCAAGCCAT
TGCCCTGCTGAAGGACAAGGACCCTGGGGCCTTCCTGATCAGGGACAGTCATTCATTCCAAGGAGCTTAT
GGGCTGGCCCTCAAGGTGGCCACACCGCCACCCAGTGCCCAGCCCTGGAAAGGGGACCCCGTGGAACAGC
TGGTCCGCCATTTCCTCATCGAGACTGGGCCCAAAGGGGTGAAGATCAAGGGCTGCCCCAGTGAGCCCTA
CTTTGGCAGCCTGTCCGCCTTGGTCTCCCAGCACTCCATCTCCCCCATCTCCCTGCCCTGCTGCCTGCGC
ATTCCCAGCAAAGATCCTCTGGAAGAGACCCCAGAGGCTCCAGTGCCCACCAACATGAGCACAGCGGCAG
ACCTCCTGCGTCAGGGTGCTGCCTGCAGCGTGCTCTACTTGACCTCAGTGGAGACAGAGTCACTGACGGG
CCCCCAAGCTGTGGCCCGGGCCAGCTCTGCAGCTCTGAGCTGTAGCCCCCGCCCGACACCAGCTGTTGTC
CACTTCAAGGTGTCAGCCCAGGGCATTACACTGACGGACAACCAAAGGAAGCTCTTCTTTCGCCGCCATT
ATCCAGTGAACAGCATCACCTTCTCCAGCACTGACCCTCAAGACCGGAGATGGACCAACCCAGACGGGAC
CACCTCCAAGATCTTTGGTTTCGTGGCCAAGAAGCCGGGAAGCCCCTGGGAGAATGTGTGTCACCTCTTT
GCAGAGCTTGACCCAGATCAGCCTGCTGGCGCCATTGTCACCTTCATCACCAAAGTTCTACTGGGCCAGA
GAAAATGA

Translation (1285 aa):
MERRWDLDLTYVTERILAAAFPARPDEQRHRGHLRELAHVLQSKHRDKYLLFNLSEKRHDLTRLNPKVQD
FGWPELHAPPLDKLCSICKAMETWLSADPQHVVVLYCKGNKGKLGVIVSAYMHYSKISAGADQALATLTM
RKFCEDKVATELQPSQRRYISYFSGLLSGSIRMNSSPLFLHYVLIPMLPAFEPGTGFQPFLKIYQSMQLV
YTSGVYHIAGPGPQQLCISLEPALLLKGDVMVTCYHKGGRGTDRTLVFRVQFHTCTIHGPQLTFPKDQLD
EAWTDERFPFQASVEFVFSSSPEKIKGSTPRNDPSVSVDYNTTEPAVRWDSYENFNQHHEDSVDGSLTHT
RGPLDGSPYAQVQRPPRQTPPAPSPEPPPPPMLSVSSDSGHSSTLTTEPAAESPGRPPPTAAERQELDRL
LGGCGVASGGRGAGRETAILDDEEQPTVGGGPHLGVYPGHRPGLSRHCSCRQGYREPCGVPNGGYYRPEG
TLERRRLAYGGYEGSPQGYAEASMEKRRLCRSLSEGLYPYPPEMGKPATGDFGYRAPGYREVVILEDPGL
PALYPCPACEEKLALPTAALYGLRLEREAGEGWASEAGKPLLHPVRPGHPLPLLLPACGHHHAPMPDYSC
LKPPKAGEEGHEGCSYTMCPEGRYGHPGYPALVTYSYGGAVPSYCPAYGRVPHSCGSPGEGRGYPSPGAH
SPRAGSISPGSPPYPQSRKLSYEIPTEEGGDRYPLPGHLASAGPLASAESLEPVSWREGPSGHSTLPRSP
RDAPCSASSELSGPSTPLHTSSPVQGKESTRRQDTRSPTSAPTQRLSPGEALPPVSQAGTGKAPELPSGS
GPEPLAPSPVSPTFPPSSPSDWPQERSPGGHSDGASPRSPVPTTLPGLRHAPWQGPRGPPDSPDGSPLTP
VPSQMPWLVASPEPPQSSPTPAFPLAASYDTNGLSQPPLPEKRHLPGPGQQPGPWGPEQASSPARGISHH
VTFAPLLSDNVPQTPEPPTQESQSNVKFVQDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAY
GLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPISLPCCLR
IPSKDPLEETPEAPVPTNMSTAADLLRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPRPTPAVV
HFKVSAQGITLTDNQRKLFFRRHYPVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLF
AELDPDQPAGAIVTFITKVLLGQRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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