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Report for CCDS24602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24602.1 Public Mus musculus 11 Mgat1 23 108 98 CCDS HistoryNCBI Gene:17308Re-query CCDS DB by CCDS ID:24602.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24602.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081794.6 ENSMUSP00000080484.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081794.6Link to Ensembl Protein Viewer:ENSMUSP00000080484.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081794Re-query CCDS DB by Protein ID:ENSMUSP00000080484
Original member Current member EBI ENSMUST00000101293.10 ENSMUSP00000098851.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101293.10Link to Ensembl Protein Viewer:ENSMUSP00000098851.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000101293Re-query CCDS DB by Protein ID:ENSMUSP00000098851
Original member Current member EBI ENSMUST00000109194.1 ENSMUSP00000104817.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109194.1Link to Ensembl Protein Viewer:ENSMUSP00000104817.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109194Re-query CCDS DB by Protein ID:ENSMUSP00000104817
Original member Current member EBI ENSMUST00000167400.7 ENSMUSP00000126303.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167400.7Link to Ensembl Protein Viewer:ENSMUSP00000126303.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167400Re-query CCDS DB by Protein ID:ENSMUSP00000126303
Original member Current member NCBI NM_001110148.1 NP_001103618.1 Accepted alive Link to Nucleotide Sequence:NM_001110148.1Link to Protein Sequence:NP_001103618.1Re-query CCDS DB by Nucleotide ID:NM_001110148Re-query CCDS DB by Protein ID:NP_001103618Link to BLAST:NP_001103618.1
Original member Current member NCBI NM_001110149.1 NP_001103619.1 Accepted alive Link to Nucleotide Sequence:NM_001110149.1Link to Protein Sequence:NP_001103619.1Re-query CCDS DB by Nucleotide ID:NM_001110149Re-query CCDS DB by Protein ID:NP_001103619Link to BLAST:NP_001103619.1
Original member Current member NCBI NM_001110150.1 NP_001103620.1 Accepted alive Link to Nucleotide Sequence:NM_001110150.1Link to Protein Sequence:NP_001103620.1Re-query CCDS DB by Nucleotide ID:NM_001110150Re-query CCDS DB by Protein ID:NP_001103620Link to BLAST:NP_001103620.1
Original member Current member NCBI NM_010794.3 NP_034924.3 Accepted alive Link to Nucleotide Sequence:NM_010794.3Link to Protein Sequence:NP_034924.3Re-query CCDS DB by Nucleotide ID:NM_010794Re-query CCDS DB by Protein ID:NP_034924Link to BLAST:NP_034924.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103618.1 447 P27808 447 100% 0 0
NP_001103619.1 447 P27808 447 100% 0 0
NP_001103620.1 447 P27808 447 100% 0 0
NP_034924.3 447 P27808 447 100% 0 0

Chromosomal Locations for CCDS 24602.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49260692 49262035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGCTGAAGAAGCAGACTGCAGGGCTTGTGCTTTGGGGTGCTATCATCTTTGTGGGCTGGAATGCCCTGC
TGCTTCTCTTCTTCTGGACACGCCCAGCACCTGGCAGGCTGCCCTCAGACAGCGCCCTTGGTGATGACCC
TGCCAGCCTCACCCGTGAGGTCATCCACCTGGCCGAGGACGCTGAGGCGGAGTTGGAGCGGCAGAGGGGA
CTGTTGCAGCAAATCAAGGAGCATTATGCTTTGTGGAGGCAGAGGTGGAGAGTTCCCACTGTGGCCCCTC
CAGCCTGGCCCCGTGTGCCTGTGACCCCCTCACCAGTGCAGATCCCCATCCTGGTCATTGCCTGTGACCG
CAGCACTGTCCGGCGCTGCTTGGATAAGTTGTTGCACTATCGGCCCTCAGCTGAGCGTTTCCCCATTATT
GTCAGTCAGGACTGTGGGCATGAAGAGACAGCACAGGTCATTGCTTCCTATGGCACTGCAGTCACACACA
TCCGGCAGCCGGACCTGAGTAACATTGCCGTGCAGCCAGACCACCGCAAGTTCCAGGGTTACTACAAGAT
TGCCAGGCACTACCGCTGGGCACTAGGCCAGATCTTCAACAAGTTCAAGTTCCCGGCCGCTGTGGTAGTG
GAGGATGATCTGGAAGTGGCACCAGACTTCTTTGAGTACTTCCAGGCCACCTACCCACTGCTGAGAACAG
ACCCCTCCCTTTGGTGTGTGTCTGCTTGGAATGACAATGGCAAGGAGCAGATGGTAGACTCAAGCAAACC
TGAGCTGCTCTATCGAACAGACTTTTTTCCTGGCCTTGGATGGCTGCTGTTGGCTGATCTGTGGGCAGAG
CTGGAGCCCAAGTGGCCCAAGGCCTTTTGGGACGACTGGATGCGCCGACCTGAGCAGCGGAAAGGACGGG
CTTGTATTCGTCCAGAAATTTCAAGAACTATGACCTTTGGTCGCAAGGGTGTGAGCCACGGGCAGTTCTT
TGACCAGCATCTTAAGTTCATCAAGCTGAACCAGCAGTTCGTCCCCTTCACCCAGTTGGACCTGTCGTAC
CTGCAGCAGGAGGCCTATGACCGGGACTTCCTCGCCCAGGTCTATGGTGCCCCCCAGCTACAGGTGGAGA
AAGTAAGGACCAATGATCAGAAGGAGCTGGGGGAGGTGCGGGTACAGTACACTAGCAGAGACAGCTTCAA
GGCCTTTGCTAAGGCCCTGGGTGTCATGGATGACCTCAAGTCTGGTGTCCCCAGGGCTGGCTACCGTGGC
ATTGTCACTTTCCAGTTTCGGGGCCGGCGTGTGCACCTGGCACCCCCACAGACATGGACTGGCTATGATC
CTAGCTGGAATTAG

Translation (447 aa):
MLKKQTAGLVLWGAIIFVGWNALLLLFFWTRPAPGRLPSDSALGDDPASLTREVIHLAEDAEAELERQRG
LLQQIKEHYALWRQRWRVPTVAPPAWPRVPVTPSPVQIPILVIACDRSTVRRCLDKLLHYRPSAERFPII
VSQDCGHEETAQVIASYGTAVTHIRQPDLSNIAVQPDHRKFQGYYKIARHYRWALGQIFNKFKFPAAVVV
EDDLEVAPDFFEYFQATYPLLRTDPSLWCVSAWNDNGKEQMVDSSKPELLYRTDFFPGLGWLLLADLWAE
LEPKWPKAFWDDWMRRPEQRKGRACIRPEISRTMTFGRKGVSHGQFFDQHLKFIKLNQQFVPFTQLDLSY
LQQEAYDRDFLAQVYGAPQLQVEKVRTNDQKELGEVRVQYTSRDSFKAFAKALGVMDDLKSGVPRAGYRG
IVTFQFRGRRVHLAPPQTWTGYDPSWN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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