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Report for CCDS2060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2060.1 Public Homo sapiens 2 IL18R1 24 110 108 CCDS HistoryNCBI Gene:8809Re-query CCDS DB by CCDS ID:2060.1Re-query CCDS DB by GeneID:8809See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2060.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000233957.7 ENSP00000233957.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000233957.7Link to Ensembl Protein Viewer:ENSP00000233957.1Re-query CCDS DB by Nucleotide ID:ENST00000233957Re-query CCDS DB by Protein ID:ENSP00000233957
Original member Current member EBI ENST00000410040.5 ENSP00000386663.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000410040.5Link to Ensembl Protein Viewer:ENSP00000386663.1Re-query CCDS DB by Nucleotide ID:ENST00000410040Re-query CCDS DB by Protein ID:ENSP00000386663
Original member Current member EBI ENST00000409599.5 ENSP00000387211.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409599.5Link to Ensembl Protein Viewer:ENSP00000387211.1Re-query CCDS DB by Nucleotide ID:ENST00000409599Re-query CCDS DB by Protein ID:ENSP00000387211
Original member Current member NCBI NM_003855.5 NP_003846.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003855.5Link to Protein Sequence:NP_003846.1Re-query CCDS DB by Nucleotide ID:NM_003855Re-query CCDS DB by Protein ID:NP_003846Link to BLAST:NP_003846.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003846.1 541 Q13478 541 100% 0 0

Chromosomal Locations for CCDS 2060.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 102362661 102362718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102367825 102368068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102371953 102372118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102375907 102376063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102381620 102381682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102384878 102384998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102386861 102387000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102390056 102390217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102394469 102394627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102396531 102396886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGAATTGTAGAGAATTACCCTTGACCCTTTGGGTGCTTATATCTGTAAGCACTGCAGAATCTTGTACTT
CACGTCCCCACATTACTGTGGTTGAAGGGGAACCTTTCTATCTGAAACATTGCTCGTGTTCACTTGCACA
TGAGATTGAAACAACCACCAAAAGCTGGTACAAAAGCAGTGGATCACAGGAACATGTGGAGCTGAACCCA
AGGAGTTCCTCGAGAATTGCTTTGCATGATTGTGTTTTGGAGTTTTGGCCAGTTGAGTTGAATGACACAG
GATCTTACTTTTTCCAAATGAAAAATTATACTCAGAAATGGAAATTAAATGTCATCAGAAGAAATAAACA
CAGCTGTTTCACTGAAAGACAAGTAACTAGTAAAATTGTGGAAGTTAAAAAATTTTTTCAGATAACCTGT
GAAAACAGTTACTATCAAACACTGGTCAACAGCACATCATTGTATAAGAACTGTAAAAAGCTACTACTGG
AGAACAATAAAAACCCAACGATAAAGAAGAACGCCGAGTTTGAAGATCAGGGGTATTACTCCTGCGTGCA
TTTCCTTCATCATAATGGAAAACTATTTAATATCACCAAAACCTTCAATATAACAATAGTGGAAGATCGC
AGTAATATAGTTCCGGTTCTTCTTGGACCAAAGCTTAACCATGTTGCAGTGGAATTAGGAAAAAACGTAA
GGCTCAACTGCTCTGCTTTGCTGAATGAAGAGGATGTAATTTATTGGATGTTCGGGGAAGAAAATGGATC
GGATCCTAATATACATGAAGAGAAAGAAATGAGAATTATGACTCCAGAAGGCAAATGGCATGCTTCAAAA
GTATTGAGAATTGAAAATATTGGTGAAAGCAATCTAAATGTTTTATATAATTGCACTGTGGCCAGCACGG
GAGGCACAGACACCAAAAGCTTCATCTTGGTGAGAAAAGCAGACATGGCTGATATCCCAGGCCACGTCTT
CACAAGAGGAATGATCATAGCTGTTTTGATCTTGGTGGCAGTAGTGTGCCTAGTGACTGTGTGTGTCATT
TATAGAGTTGACTTGGTTCTATTTTATAGACATTTAACGAGAAGAGATGAAACATTAACAGATGGAAAAA
CATATGATGCTTTTGTGTCTTACCTAAAAGAATGCCGACCTGAAAATGGAGAGGAGCACACCTTTGCTGT
GGAGATTTTGCCCAGGGTGTTGGAGAAACATTTTGGGTATAAGTTATGCATATTTGAAAGGGATGTAGTG
CCTGGAGGAGCTGTTGTTGATGAAATCCACTCACTGATAGAGAAAAGCCGAAGACTAATCATTGTCCTAA
GTAAAAGTTATATGTCTAATGAGGTCAGGTATGAACTTGAAAGTGGACTCCATGAAGCATTGGTGGAAAG
AAAAATTAAAATAATCTTAATTGAATTTACACCTGTTACTGACTTCACATTCTTGCCCCAATCACTAAAG
CTTTTGAAATCTCACAGAGTTCTGAAGTGGAAGGCCGATAAATCTCTTTCTTATAACTCAAGGTTCTGGA
AGAACCTTCTTTACTTAATGCCTGCAAAAACAGTCAAGCCAGGTAGAGACGAACCGGAAGTCTTGCCTGT
TCTTTCCGAGTCTTAA

Translation (541 aa):
MNCRELPLTLWVLISVSTAESCTSRPHITVVEGEPFYLKHCSCSLAHEIETTTKSWYKSSGSQEHVELNP
RSSSRIALHDCVLEFWPVELNDTGSYFFQMKNYTQKWKLNVIRRNKHSCFTERQVTSKIVEVKKFFQITC
ENSYYQTLVNSTSLYKNCKKLLLENNKNPTIKKNAEFEDQGYYSCVHFLHHNGKLFNITKTFNITIVEDR
SNIVPVLLGPKLNHVAVELGKNVRLNCSALLNEEDVIYWMFGEENGSDPNIHEEKEMRIMTPEGKWHASK
VLRIENIGESNLNVLYNCTVASTGGTDTKSFILVRKADMADIPGHVFTRGMIIAVLILVAVVCLVTVCVI
YRVDLVLFYRHLTRRDETLTDGKTYDAFVSYLKECRPENGEEHTFAVEILPRVLEKHFGYKLCIFERDVV
PGGAVVDEIHSLIEKSRRLIIVLSKSYMSNEVRYELESGLHEALVERKIKIILIEFTPVTDFTFLPQSLK
LLKSHRVLKWKADKSLSYNSRFWKNLLYLMPAKTVKPGRDEPEVLPVLSES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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