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Report for CCDS11030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11030.1 Public Homo sapiens 17 SHPK 24 110 108 CCDS HistoryNCBI Gene:23729Re-query CCDS DB by CCDS ID:11030.1Re-query CCDS DB by GeneID:23729See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11030.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000225519.5 ENSP00000225519.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000225519.5Link to Ensembl Protein Viewer:ENSP00000225519.3Re-query CCDS DB by Nucleotide ID:ENST00000225519Re-query CCDS DB by Protein ID:ENSP00000225519
Original member Current member EBI ENST00000572919.1 ENSP00000461416.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000572919.1Link to Ensembl Protein Viewer:ENSP00000461416.1Re-query CCDS DB by Nucleotide ID:ENST00000572919Re-query CCDS DB by Protein ID:ENSP00000461416
Original member Current member NCBI NM_013276.4 NP_037408.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013276.4Link to Protein Sequence:NP_037408.2Re-query CCDS DB by Nucleotide ID:NM_013276Re-query CCDS DB by Protein ID:NP_037408Link to BLAST:NP_037408.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037408.2 478 Q9UHJ6 478 100% 0 0

Chromosomal Locations for CCDS 11030.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 3610560 3610972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3615337 3615537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3621237 3621412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3623339 3623491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3624048 3624231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3630205 3630346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3636052 3636219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGCTGCGCGGCCGATCACCCTCGGCATTGACCTGGGCACCACATCTGTGAAGGCAGCTCTGCTGAGGG
CCGCGCCCGACGACCCATCCGGGTTCGCAGTGCTGGCGAGCTGTGCCCGTGCTGCGCGGGCAGAGGCGGC
GGTCGAGAGCGCGGTGGCCGGGCCCCAGGGGCGGGAGCAGGATGTGAGTAGAATCCTCCAAGCCCTACAC
GAGTGCCTTGCTGCCCTTCCCCGACCCCAGCTCCGGAGCGTCGTGGGCATCGGGGTGTCGGGCCAGATGC
ATGGAGTCGTGTTTTGGAAAACAGGCCAAGGCTGTGAATGGACAGAGGGAGGGATTACCCCGGTGTTCGA
GCCCCGAGCTGTTAGCCACCTGGTCACGTGGCAGGATGGCCGATGTAGCAGCGAATTCCTGGCCTCTCTG
CCCCAGCCGAAGTCTCATCTCAGTGTGGCCACGGGCTTCGGCTGTGCAACCATCTTCTGGCTTTTGAAAT
ATCGCCCAGAGTTCCTGAAGTCCTACGACGCAGCCGGTACCATCCACGACTATGTGGTTGCCATGCTGTG
TGGCTTGCCAAGACCTCTGATGTCCGACCAGAATGCTGCCAGCTGGGGCTATTTCAACACGCAGAGCCAA
AGCTGGAACGTAGAGACACTGAGGAGCTCGGGTTTTCCTGTCCACCTGCTCCCAGACATCGCCGAGCCTG
GCAGTGTGGCGGGCAGAACTTCCCACATGTGGTTTGAAATCCCAAAGGGGACGCAGGTGGGAGTGGCCTT
GGGTGATTTACAGGCCTCTGTCTATTCCTGCATGGCCCAGAGGACAGATGCAGTTCTCAACATCAGCACC
TCGGTTCAGCTGGCAGCCTCCATGCCTTCAGGATTCCAGCCTGCACAGACTCCAGACCCTACGGCCCCAG
TCGCCTACTTCCCATACTTCAACAGGACCTACCTGGGGGTGGCCGCGTCACTCAACGGGGGCAATGTGCT
GGCCACGTTCGTCCACATGCTGGTTCAGTGGATGGCAGATCTAGGCCTGGAGGTTGAAGAATCCACTGTG
TATTCACGCATGATTCAGGCAGCTGTGCAGCAGAGAGATACCCACCTGACCATCACCCCGACAGTGCTGG
GGGAGAGGCACCTGCCGGACCAGCTGGCCTCAGTGACCAGAATCTCCTCCTCCGACCTCTCCCTGGGGCA
CGTGACCCGGGCTCTGTGCCGAGGCATTGTTCAGAACCTGCACTCCATGCTTCCGATTCAGCAGCTCCAG
GAGTGGGGCGTGGAGAGGGTGATGGGCAGTGGGAGTGCGCTGTCCAGGAATGACGTGCTGAAGCAGGAGG
TGCAGAGGGCTTTCCCTTTGCCCATGTCCTTTGGGCAGGATGTGGATGCAGCTGTCGGGGCAGCTCTGGT
CATGCTCCGGAGACACCTCAACCAGAAGGAATCTTAG

Translation (478 aa):
MAARPITLGIDLGTTSVKAALLRAAPDDPSGFAVLASCARAARAEAAVESAVAGPQGREQDVSRILQALH
ECLAALPRPQLRSVVGIGVSGQMHGVVFWKTGQGCEWTEGGITPVFEPRAVSHLVTWQDGRCSSEFLASL
PQPKSHLSVATGFGCATIFWLLKYRPEFLKSYDAAGTIHDYVVAMLCGLPRPLMSDQNAASWGYFNTQSQ
SWNVETLRSSGFPVHLLPDIAEPGSVAGRTSHMWFEIPKGTQVGVALGDLQASVYSCMAQRTDAVLNIST
SVQLAASMPSGFQPAQTPDPTAPVAYFPYFNRTYLGVAASLNGGNVLATFVHMLVQWMADLGLEVEESTV
YSRMIQAAVQQRDTHLTITPTVLGERHLPDQLASVTRISSSDLSLGHVTRALCRGIVQNLHSMLPIQQLQ
EWGVERVMGSGSALSRNDVLKQEVQRAFPLPMSFGQDVDAAVGAALVMLRRHLNQKES


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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