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Report for CCDS13035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13035.1 Public Homo sapiens 20 PCED1A 24 110 108 CCDS HistoryNCBI Gene:64773Re-query CCDS DB by CCDS ID:13035.1Re-query CCDS DB by GeneID:64773See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13035.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360652.7 ENSP00000353868.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360652.7Link to Ensembl Protein Viewer:ENSP00000353868.2Re-query CCDS DB by Nucleotide ID:ENST00000360652Re-query CCDS DB by Protein ID:ENSP00000353868
Original member Current member NCBI NM_022760.6 NP_073597.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022760.6Link to Protein Sequence:NP_073597.2Re-query CCDS DB by Nucleotide ID:NM_022760Re-query CCDS DB by Protein ID:NP_073597Link to BLAST:NP_073597.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073597.2 454 Q9H1Q7-1 454 100% 0 0

Chromosomal Locations for CCDS 13035.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 2835462 2835709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2836039 2836314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2838232 2838478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2838596 2838746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2838844 2839082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2839192 2839271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2839789 2839912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGGTCTTCTGTCTGTCGAGCGAGGAGCCGCGCCGCCCGCTGCGAAGCGACATGGTCCACTTCCAGGCCT
CGGAAGTCCAGCAGCTGCTACACAACAAGTTCGTGGTCATCTTGGGGGACTCCATTCAGAGGGCTGTGTA
CAAGGACCTGGTGCTCTTGCTCCAGAAAGACTCACTGCTCACAGCTGCCCAGCTGAAAGCCAAGGGGGAG
CTGAGCTTTGAACAGGACCAGCTGGTGGCTGGGGGCCAGCTGGGCGAGCTGCACAACGGGACACAGTATC
GTGAGGTCCGCCAGTTCTGCTCGGGCTCTGGCCACCACCTTGTGCGCTTCTACTTCCTCACTCGTGTTTA
CTCCGAGTACCTTGAGGATGTTCTGGAAGAGCTGACATATGGACCTGCCCCGGACCTGGTGATCATCAAC
TCCTGCCTCTGGGATCTCTCCAGATATGGTCGCTGCTCAATGGAGAGCTACCGGGAGAACCTGGAGCGGG
TGTTTGTGCGCATGGACCAAGTATTGCCAGACTCCTGCCTGCTGGTGTGGAACATGGCGATGCCCCTCGG
GGAACGTATCACTGGGGGTTTCCTCCTGCCAGAGCTCCAGCCCCTGGCAGGCTCCCTGCGGCGGGATGTG
GTTGAAGGGAACTTCTACAGTGCTACGCTGGCCGGGGACCACTGCTTTGATGTCCTAGACCTCCACTTTC
ACTTCCGGCATGCAGTACAGCACCGTCATCGGGATGGTGTCCACTGGGACCAGCATGCACACCGCCACCT
CTCACACCTGCTTCTGACCCATGTGGCTGACGCCTGGGGCGTGGAGCTGCCCAAGCGTGGCTATCCCCCT
GACCCGTGGATTGAGGACTGGGCAGAGATGAATCATCCATTCCAGGGAAGCCATAGGCAGACCCCAGACT
TCGGGGAGCACCTGGCCTTGCTCCCACCCCCACCTTCTTCTTTGCCTCCTCCCATGCCTTTTCCCTACCC
GCTTCCTCAGCCCTCGCCACCTCCCCTCTTCCCACCCCTGCCCCAGGATACCCCTTTTTTCCCAGGCCAG
CCCTTCCCACCCCATGAATTCTTCAACTATAATCCAGTGGAGGACTTCTCGATGCCACCCCACTTAGGAT
GTGGCCCTGGAGTGAACTTTGTGCCTGGCCCTCTGCCACCTCCAATCCCTGGCCCTAATCCCCATGGTCA
GCACTGGGGCCCAGTGGTCCACCGGGGGATGCCACGCTATGTTCCTAACAGCCCCTACCATGTGCGGAGA
ATGGGGGGGCCCTGCAGGCAGCGGCTCAGACACTCAGAGAGACTGATCCACACATACAAACTGGACAGAC
GGCCTCCTGCCCATTCGGGGACATGGCCTGGGTAG

Translation (454 aa):
MVFCLSSEEPRRPLRSDMVHFQASEVQQLLHNKFVVILGDSIQRAVYKDLVLLLQKDSLLTAAQLKAKGE
LSFEQDQLVAGGQLGELHNGTQYREVRQFCSGSGHHLVRFYFLTRVYSEYLEDVLEELTYGPAPDLVIIN
SCLWDLSRYGRCSMESYRENLERVFVRMDQVLPDSCLLVWNMAMPLGERITGGFLLPELQPLAGSLRRDV
VEGNFYSATLAGDHCFDVLDLHFHFRHAVQHRHRDGVHWDQHAHRHLSHLLLTHVADAWGVELPKRGYPP
DPWIEDWAEMNHPFQGSHRQTPDFGEHLALLPPPPSSLPPPMPFPYPLPQPSPPPLFPPLPQDTPFFPGQ
PFPPHEFFNYNPVEDFSMPPHLGCGPGVNFVPGPLPPPIPGPNPHGQHWGPVVHRGMPRYVPNSPYHVRR
MGGPCRQRLRHSERLIHTYKLDRRPPAHSGTWPG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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