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Report for CCDS33969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33969.1 Public Homo sapiens 4 RBPJ 24 110 108 CCDS HistoryNCBI Gene:3516Re-query CCDS DB by CCDS ID:33969.1Re-query CCDS DB by GeneID:3516See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33969.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000348160.9 ENSP00000339699.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000348160.9Link to Ensembl Protein Viewer:ENSP00000339699.5Re-query CCDS DB by Nucleotide ID:ENST00000348160Re-query CCDS DB by Protein ID:ENSP00000339699
Original member Current member EBI ENST00000342320.8 ENSP00000340124.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000342320.8Link to Ensembl Protein Viewer:ENSP00000340124.4Re-query CCDS DB by Nucleotide ID:ENST00000342320Re-query CCDS DB by Protein ID:ENSP00000340124
Original member Current member EBI ENST00000505958.6 ENSP00000426872.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505958.6Link to Ensembl Protein Viewer:ENSP00000426872.2Re-query CCDS DB by Nucleotide ID:ENST00000505958Re-query CCDS DB by Protein ID:ENSP00000426872
Original member Current member EBI ENST00000681093.1 ENSP00000504964.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681093.1Link to Ensembl Protein Viewer:ENSP00000504964.1Re-query CCDS DB by Nucleotide ID:ENST00000681093Re-query CCDS DB by Protein ID:ENSP00000504964
Original member Current member EBI ENST00000680928.1 ENSP00000505493.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680928.1Link to Ensembl Protein Viewer:ENSP00000505493.1Re-query CCDS DB by Nucleotide ID:ENST00000680928Re-query CCDS DB by Protein ID:ENSP00000505493
Original member Current member NCBI NM_001374401.1 NP_001361330.1 Accepted alive Link to Nucleotide Sequence:NM_001374401.1Link to Protein Sequence:NP_001361330.1Re-query CCDS DB by Nucleotide ID:NM_001374401Re-query CCDS DB by Protein ID:NP_001361330Link to BLAST:NP_001361330.1
Original member Current member NCBI NM_001374402.1 NP_001361331.1 Accepted alive Link to Nucleotide Sequence:NM_001374402.1Link to Protein Sequence:NP_001361331.1Re-query CCDS DB by Nucleotide ID:NM_001374402Re-query CCDS DB by Protein ID:NP_001361331Link to BLAST:NP_001361331.1
Original member Current member NCBI NM_001374403.1 NP_001361332.1 Accepted alive Link to Nucleotide Sequence:NM_001374403.1Link to Protein Sequence:NP_001361332.1Re-query CCDS DB by Nucleotide ID:NM_001374403Re-query CCDS DB by Protein ID:NP_001361332Link to BLAST:NP_001361332.1
Original member Current member NCBI NM_001379406.1 NP_001366335.1 Accepted alive Link to Nucleotide Sequence:NM_001379406.1Link to Protein Sequence:NP_001366335.1Re-query CCDS DB by Nucleotide ID:NM_001379406Re-query CCDS DB by Protein ID:NP_001366335Link to BLAST:NP_001366335.1
Original member Current member NCBI NM_001379407.1 NP_001366336.1 Accepted alive Link to Nucleotide Sequence:NM_001379407.1Link to Protein Sequence:NP_001366336.1Re-query CCDS DB by Nucleotide ID:NM_001379407Re-query CCDS DB by Protein ID:NP_001366336Link to BLAST:NP_001366336.1
Original member Current member NCBI NM_203284.3 NP_976029.1 Accepted alive Link to Nucleotide Sequence:NM_203284.3Link to Protein Sequence:NP_976029.1Re-query CCDS DB by Nucleotide ID:NM_203284Re-query CCDS DB by Protein ID:NP_976029Link to BLAST:NP_976029.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001361330.1 486 Q06330-6 486 100% 0 0
NP_001361331.1 486 Q06330-6 486 100% 0 0
NP_001361332.1 486 Q06330-6 486 100% 0 0
NP_001366335.1 486 Q06330-6 486 100% 0 0
NP_001366336.1 486 Q06330-6 486 100% 0 0
NP_976029.1 486 Q06330-6 486 100% 0 0

Chromosomal Locations for CCDS 33969.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 26362612 26362628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26386353 26386391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26406175 26406270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26415475 26415640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26420551 26420725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26424342 26424479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26424631 26424743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26428720 26428860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26429898 26430053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26430419 26430522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26430692 26431007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGGCGTGGATTAAAAGGAAATTTGGTGAGCGGCCTCCACCTAAACGACTTACTAGGGAAGCTATGCGAA
ATTATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCATGCAAAAGTTGCACAGAAGTCATATGG
AAATGAAAAAAGGTTTTTTTGCCCACCTCCTTGTGTATATCTTATGGGCAGTGGATGGAAGAAAAAAAAA
GAACAAATGGAACGCGATGGTTGTTCTGAACAAGAGTCTCAACCGTGTGCATTTATTGGGATAGGAAATA
GTGACCAAGAAATGCAGCAGCTAAACTTGGAAGGAAAGAACTATTGCACAGCCAAAACATTGTATATATC
TGACTCAGACAAGCGAAAGCACTTCATGTTGTCTGTAAAGATGTTCTATGGCAACAGTGATGACATTGGT
GTGTTCCTCAGCAAGCGGATAAAAGTCATCTCCAAACCTTCCAAAAAGAAGCAGTCATTGAAAAATGCTG
ACTTATGCATTGCCTCAGGAACAAAGGTGGCTCTGTTTAATCGACTACGATCCCAGACAGTTAGTACCAG
ATACTTGCATGTAGAAGGAGGTAATTTTCATGCCAGTTCACAGCAGTGGGGAGCCTTTTTTATTCATCTC
TTGGATGATGATGAATCAGAAGGAGAAGAATTCACAGTCCGAGATGGCTACATCCATTATGGACAAACAG
TCAAACTTGTGTGCTCAGTTACTGGCATGGCACTCCCAAGATTGATAATTAGGAAAGTTGATAAGCAGAC
CGCATTATTGGATGCAGATGATCCTGTGTCACAACTCCATAAATGTGCATTTTACCTTAAGGATACAGAA
AGAATGTATTTGTGCCTTTCTCAAGAAAGAATAATTCAATTTCAGGCCACTCCATGTCCAAAAGAACCAA
ATAAAGAGATGATAAATGATGGCGCTTCCTGGACAATCATTAGCACAGATAAGGCAGAGTATACATTTTA
TGAGGGAATGGGCCCTGTCCTTGCCCCAGTCACTCCTGTGCCTGTGGTAGAGAGCCTTCAGTTGAATGGC
GGTGGGGACGTAGCAATGCTTGAACTTACAGGACAGAATTTCACTCCAAATTTACGAGTGTGGTTTGGGG
ATGTAGAAGCTGAAACTATGTACAGGTGTGGAGAGAGTATGCTCTGTGTCGTCCCAGACATTTCTGCATT
CCGAGAAGGTTGGAGATGGGTCCGGCAACCAGTCCAGGTTCCAGTAACTTTGGTCCGAAATGATGGAATC
ATTTATTCCACCAGCCTTACCTTTACCTACACACCAGAACCAGGGCCGCGGCCACATTGCAGTGCAGCAG
GAGCAATCCTTCGAGCCAATTCAAGCCAGGTGCCCCCTAACGAATCAAACACAAACAGCGAGGGAAGTTA
CACAAACGCCAGCACAAATTCAACCAGTGTCACATCATCTACAGCCACAGTGGTATCCTAA

Translation (486 aa):
MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK
EQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIG
VFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHL
LDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTE
RMYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNG
GGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGI
IYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSYTNASTNSTSVTSSTATVVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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