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Report for CCDS44823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44823.1 Public Homo sapiens 12 PEX5 24 110 108 CCDS HistoryNCBI Gene:5830Re-query CCDS DB by CCDS ID:44823.1Re-query CCDS DB by GeneID:5830See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 44823.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000455147.6 ENSP00000400647.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455147.6Link to Ensembl Protein Viewer:ENSP00000400647.2Re-query CCDS DB by Nucleotide ID:ENST00000455147Re-query CCDS DB by Protein ID:ENSP00000400647
Original member Current member EBI ENST00000420616.6 ENSP00000410159.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420616.6Link to Ensembl Protein Viewer:ENSP00000410159.2Re-query CCDS DB by Nucleotide ID:ENST00000420616Re-query CCDS DB by Protein ID:ENSP00000410159
Original member Current member EBI ENST00000675855.1 ENSP00000502374.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000675855.1Link to Ensembl Protein Viewer:ENSP00000502374.1Re-query CCDS DB by Nucleotide ID:ENST00000675855Re-query CCDS DB by Protein ID:ENSP00000502374
Original member Current member NCBI NM_001131025.2 NP_001124497.1 Accepted alive Link to Nucleotide Sequence:NM_001131025.2Link to Protein Sequence:NP_001124497.1Re-query CCDS DB by Nucleotide ID:NM_001131025Re-query CCDS DB by Protein ID:NP_001124497Link to BLAST:NP_001124497.1
Original member Current member NCBI NM_001131026.2 NP_001124498.1 Accepted alive Link to Nucleotide Sequence:NM_001131026.2Link to Protein Sequence:NP_001124498.1Re-query CCDS DB by Nucleotide ID:NM_001131026Re-query CCDS DB by Protein ID:NP_001124498Link to BLAST:NP_001124498.1
Original member Current member NCBI NM_001300789.3 NP_001287718.2 Accepted alive Link to Nucleotide Sequence:NM_001300789.3Link to Protein Sequence:NP_001287718.2Re-query CCDS DB by Nucleotide ID:NM_001300789Re-query CCDS DB by Protein ID:NP_001287718Link to BLAST:NP_001287718.2
Original member Current member NCBI NM_001351131.2 NP_001338060.1 Accepted alive Link to Nucleotide Sequence:NM_001351131.2Link to Protein Sequence:NP_001338060.1Re-query CCDS DB by Nucleotide ID:NM_001351131Re-query CCDS DB by Protein ID:NP_001338060Link to BLAST:NP_001338060.1
Original member Current member NCBI NM_001351132.2 NP_001338061.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001351132.2Link to Protein Sequence:NP_001338061.1Re-query CCDS DB by Nucleotide ID:NM_001351132Re-query CCDS DB by Protein ID:NP_001338061Link to BLAST:NP_001338061.1
Original member Current member NCBI NM_001351133.2 NP_001338062.1 Accepted alive Link to Nucleotide Sequence:NM_001351133.2Link to Protein Sequence:NP_001338062.1Re-query CCDS DB by Nucleotide ID:NM_001351133Re-query CCDS DB by Protein ID:NP_001338062Link to BLAST:NP_001338062.1
Original member Current member NCBI NM_001351134.2 NP_001338063.1 Accepted alive Link to Nucleotide Sequence:NM_001351134.2Link to Protein Sequence:NP_001338063.1Re-query CCDS DB by Nucleotide ID:NM_001351134Re-query CCDS DB by Protein ID:NP_001338063Link to BLAST:NP_001338063.1
Original member Current member NCBI NM_001374647.2 NP_001361576.1 Accepted alive Link to Nucleotide Sequence:NM_001374647.2Link to Protein Sequence:NP_001361576.1Re-query CCDS DB by Nucleotide ID:NM_001374647Re-query CCDS DB by Protein ID:NP_001361576Link to BLAST:NP_001361576.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124497.1 639 P50542-1 639 100% 0 0
NP_001124498.1 639 P50542-1 639 100% 0 0
NP_001287718.2 639 P50542-1 639 100% 0 0
NP_001338060.1 639 P50542-1 639 100% 0 0
NP_001338061.1 639 P50542-1 639 100% 0 0
NP_001338062.1 639 P50542-1 639 100% 0 0
NP_001338063.1 639 P50542-1 639 100% 0 0
NP_001361576.1 639 P50542-1 639 100% 0 0

Chromosomal Locations for CCDS 44823.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 7190378 7190524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7190888 7190923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7191226 7191358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7191569 7191700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7199011 7199113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7201751 7201841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7202241 7202351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7202612 7202704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7203432 7203551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7207659 7207802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7208010 7208080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7208457 7208669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7209005 7209170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7209683 7209840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7210022 7210223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGGCAATGCGGGAGCTGGTGGAGGCCGAATGCGGGGGTGCCAACCCGCTCATGAAGCTCGCCGGGCACT
TCACCCAGGACAAGGCCCTTCGGCAGGAGGGATTGAGGCCTGGCCCCTGGCCCCCCGGAGCCCCGGCCTC
TGAGGCAGCCTCCAAGCCTTTGGGAGTAGCTTCTGAAGATGAGTTGGTGGCTGAATTCCTGCAGGACCAG
AATGCACCCCTTGTGTCCCGTGCCCCTCAGACCTTCAAGATGGATGACCTCCTGGCTGAGATGCAGCAGA
TTGAGCAGTCAAACTTCCGCCAGGCTCCCCAGAGAGCCCCTGGTGTGGCAGACTTGGCCTTGTCTGAGAA
CTGGGCCCAGGAGTTTCTTGCAGCTGGAGATGCTGTGGATGTAACTCAGGATTATAATGAGACTGACTGG
TCCCAAGAATTCATCTCTGAAGTTACAGACCCCTTGTCTGTGTCCCCTGCCCGCTGGGCTGAGGAATATT
TGGAGCAATCAGAGGAGAAGCTGTGGCTGGGAGAACCTGAGGGAACAGCCACCGATCGCTGGTATGATGA
ATATCATCCTGAGGAGGATCTGCAGCACACGGCCAGTGACTTTGTGGCCAAAGTGGATGACCCCAAATTG
GCTAATTCTGAGTTCCTGAAATTCGTGCGGCAGATTGGCGAAGGGCAGGTGTCCCTGGAGTCCGGTGCAG
GGTCGGGCCGAGCTCAGGCAGAACAGTGGGCAGCAGAGTTTATACAGCAGCAGGGTACATCAGATGCCTG
GGTTGACCAGTTCACAAGACCAGTAAACACATCTGCCCTTGATATGGAGTTTGAACGAGCCAAGTCAGCT
ATAGAGTCTGATGTCGATTTCTGGGACAAGTTGCAGGCAGAGTTGGAGGAGATGGCAAAACGGGATGCTG
AGGCCCACCCCTGGCTTTCTGACTATGATGACCTTACGTCAGCTACCTATGATAAGGGGTACCAGTTTGA
GGAGGAGAACCCCTTGCGTGATCACCCTCAGCCTTTTGAAGAAGGGCTGCGGCGCCTTCAGGAGGGGGAC
CTGCCAAATGCTGTGCTGCTTTTTGAGGCAGCTGTGCAGCAGGATCCTAAGCACATGGAAGCTTGGCAGT
ATCTGGGTACCACCCAGGCAGAGAATGAACAAGAACTATTAGCCATCAGTGCATTGCGGAGGTGTCTGGA
GCTAAAGCCAGATAACCAGACAGCACTGATGGCGCTGGCTGTGAGCTTCACCAACGAGTCCCTGCAGCGA
CAGGCCTGTGAAACCCTACGAGACTGGCTGCGGTACACACCAGCCTATGCCCATCTGGTGACACCTGCTG
AAGAAGGGGCTGGTGGGGCAGGACTGGGCCCCAGCAAGCGTATCCTGGGATCTCTCTTGTCTGACTCCCT
GTTTCTTGAAGTGAAAGAGCTCTTCCTGGCAGCTGTGCGGCTGGACCCTACCTCCATTGACCCTGATGTG
CAGTGTGGCTTGGGAGTCCTTTTCAACCTGAGTGGGGAGTATGACAAGGCCGTGGACTGCTTCACAGCTG
CCCTCAGCGTTCGTCCCAATGACTATTTGCTGTGGAATAAGCTAGGCGCCACCCTGGCCAATGGAAACCA
GAGTGAAGAAGCAGTAGCTGCGTACCGCCGGGCCCTCGAGCTCCAGCCTGGCTATATCCGGTCCCGCTAT
AACCTGGGCATCAGCTGCATCAACCTCGGGGCTCACCGGGAGGCTGTGGAGCACTTTCTGGAGGCCCTGA
ACATGCAGAGGAAAAGCCGGGGCCCCCGGGGTGAAGGAGGTGCCATGTCGGAGAACATCTGGAGCACCCT
GCGTTTGGCATTGTCTATGTTAGGCCAGAGCGATGCCTATGGGGCAGCCGACGCGCGGGATCTGTCCACC
CTCCTAACTATGTTTGGCCTGCCCCAGTGA

Translation (639 aa):
MAMRELVEAECGGANPLMKLAGHFTQDKALRQEGLRPGPWPPGAPASEAASKPLGVASEDELVAEFLQDQ
NAPLVSRAPQTFKMDDLLAEMQQIEQSNFRQAPQRAPGVADLALSENWAQEFLAAGDAVDVTQDYNETDW
SQEFISEVTDPLSVSPARWAEEYLEQSEEKLWLGEPEGTATDRWYDEYHPEEDLQHTASDFVAKVDDPKL
ANSEFLKFVRQIGEGQVSLESGAGSGRAQAEQWAAEFIQQQGTSDAWVDQFTRPVNTSALDMEFERAKSA
IESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGD
LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR
QACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV
QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY
NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST
LLTMFGLPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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