NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55106.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55106.2 Public Homo sapiens 7 SUGCT 24 110 108 CCDS HistoryNCBI Gene:79783Re-query CCDS DB by CCDS ID:55106.2Re-query CCDS DB by GeneID:79783See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 55106.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000401647.7 ENSP00000385222.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401647.7Link to Ensembl Protein Viewer:ENSP00000385222.3Re-query CCDS DB by Nucleotide ID:ENST00000401647Re-query CCDS DB by Protein ID:ENSP00000385222
Original member Current member NCBI NM_001193312.2 NP_001180241.2 Accepted alive Link to Nucleotide Sequence:NM_001193312.2Link to Protein Sequence:NP_001180241.2Re-query CCDS DB by Nucleotide ID:NM_001193312Re-query CCDS DB by Protein ID:NP_001180241Link to BLAST:NP_001180241.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180241.2 390 Q9HAC7-4 390 100% 0 0

Chromosomal Locations for CCDS 55106.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 40135021 40135120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40180947 40180998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40181955 40182028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40188495 40188580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40189544 40189594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40194940 40195060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40237635 40237726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40316760 40316855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40449287 40449358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40459101 40459198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40496284 40496386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40749434 40749497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40860316 40860479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGCTGGCGACGCTGGCGAGGGTGGCAGCTCTGCGCAGAACCTGCCTCTTCTCCGGCCGGGGCGGCGGGA
GGGGGCTGTGGACTGGCCGCCCGCAGTCAGATATGAACAATATAAAGCCATTGGAAGGGGTAAAAATTCT
GGATCTAACAAGAGTCCTGGCGGGACCTTTTGCTACTATGAATTTAGGAGATCTTGGAGCAGAAGTTATA
AAAGTGGAGAGACCAGGAGCTGGTGATGATACACGAACTTGGGGGCCACCTTTTGTTGGGACAGAAAGTA
CATATTATCTCAGTGTTAACCGAAATAAAAAAAGTATTGCTGTTAATATCAAGGATCCAAAAGGGGTGAA
AATCATCAAAGAGCTTGCAGCTGTTTGTGATGTGTTTGTGGAAAACTATGTCCCTGGCAAACTGTCTGCA
ATGGGCCTGGGATATGAAGATATAGACGAGATTGCTCCTCACATCATCTATTGTTCCATCACAGGGTATG
GTCAGACAGGTCCAATTTCTCAGCGAGCTGGTTATGATGCTGTTGCCTCGGCTGTTTCTGGTCTGATGCA
CATCACAGGGCCTGAGGTGGCGTGTTTGTCTCACATAGCTGCAAATTATCTTATTGGTCAAAAGGAAGCA
AAACGTTGGGGTACAGCTCATGGCAGTATCGTTCCTTACCAGGCTTTTAAAACCAAGGATGGCTATATTG
TAGTTGGAGCAGGAAATAACCAGCAGTTTGCCACCGTCTGCAAGATCTTGGATTTGCCTGAGTTGATTGA
TAATTCCAAGTATAAAACTAACCACCTTCGGGTACACAATAGAAAAGAGCTTATTAAAATATTATCTGAA
CGGTTTGAAGAAGAACTGACCAGCAAGTGGTTATATCTTTTTGAAGGCAGTGGAGTCCCGTATGGCCCAA
TCAACAACATGAAGAATGTATTTGCAGAACCTCAGGTATTACACAATGGCCTCGTTATGGAGATGGAGCA
TCCAACTGTGGGGAAGATTTCCGTCCCAGGCCCAGCTGTGAGATACAGTAAGTTCAAGATGTCAGAGGCC
AGGCCGCCCCCGCTGCTCGGGCAGCACACAACGCACATCCTGAAGGAGGTCCTGAGATACGATGACAGGG
CCATCGGGGAGCTGCTCAGCGCTGGAGTGGTGGACCAACATGAAACTCACTGA

Translation (390 aa):
MLATLARVAALRRTCLFSGRGGGRGLWTGRPQSDMNNIKPLEGVKILDLTRVLAGPFATMNLGDLGAEVI
KVERPGAGDDTRTWGPPFVGTESTYYLSVNRNKKSIAVNIKDPKGVKIIKELAAVCDVFVENYVPGKLSA
MGLGYEDIDEIAPHIIYCSITGYGQTGPISQRAGYDAVASAVSGLMHITGPEVACLSHIAANYLIGQKEA
KRWGTAHGSIVPYQAFKTKDGYIVVGAGNNQQFATVCKILDLPELIDNSKYKTNHLRVHNRKELIKILSE
RFEEELTSKWLYLFEGSGVPYGPINNMKNVFAEPQVLHNGLVMEMEHPTVGKISVPGPAVRYSKFKMSEA
RPPPLLGQHTTHILKEVLRYDDRAIGELLSAGVVDQHETH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH