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Report for CCDS3224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3224.1 Public Homo sapiens 3 ZMAT3 24 110 108 CCDS HistoryNCBI Gene:64393Re-query CCDS DB by CCDS ID:3224.1Re-query CCDS DB by GeneID:64393See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3224.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311417.7 ENSP00000311221.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311417.7Link to Ensembl Protein Viewer:ENSP00000311221.2Re-query CCDS DB by Nucleotide ID:ENST00000311417Re-query CCDS DB by Protein ID:ENSP00000311221
Original member Current member NCBI NM_001375824.1 NP_001362753.1 Accepted alive Link to Nucleotide Sequence:NM_001375824.1Link to Protein Sequence:NP_001362753.1Re-query CCDS DB by Nucleotide ID:NM_001375824Re-query CCDS DB by Protein ID:NP_001362753Link to BLAST:NP_001362753.1
Original member Current member NCBI NM_001375825.1 NP_001362754.1 Accepted alive Link to Nucleotide Sequence:NM_001375825.1Link to Protein Sequence:NP_001362754.1Re-query CCDS DB by Nucleotide ID:NM_001375825Re-query CCDS DB by Protein ID:NP_001362754Link to BLAST:NP_001362754.1
Original member Current member NCBI NM_022470.4 NP_071915.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022470.4Link to Protein Sequence:NP_071915.1Re-query CCDS DB by Nucleotide ID:NM_022470Re-query CCDS DB by Protein ID:NP_071915Link to BLAST:NP_071915.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362753.1 289 Q9HA38-1 289 100% 0 0
NP_001362754.1 289 Q9HA38-1 289 100% 0 0
NP_071915.1 289 Q9HA38-1 289 100% 0 0

Chromosomal Locations for CCDS 3224.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 179025017 179025228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179027423 179027523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179027646 179027812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179030880 179030999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179067483 179067752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGATCCTCTTGCAACACGCCGTGCTTCCTCCACCTAAGCAGCCCTCACCCTCGCCTCCTATGTCAGTGG
CCACCAGGTCTACAGGAACCTTGCAGCTTCCACCACAGAAGCCTTTTGGGCAGGAGGCTTCCTTGCCTCT
TGCAGGGGAAGAAGAGTTATCGAAGGGAGGGGAGCAAGACTGTGCCCTGGAGGAGCTATGTAAGCCCCTG
TACTGCAAACTCTGCAATGTCACCTTGAACTCTGCACAGCAAGCCCAGGCTCATTATCAGGGTAAAAATC
ATGGTAAGAAACTCCGAAATTACTATGCAGCAAATAGCTGTCCTCCTCCTGCTAGAATGAGCAATGTGGT
CGAGCCTGCAGCTACTCCAGTTGTTCCAGTCCCTCCGCAGATGGGCTCCTTTAAGCCAGGAGGCCGAGTG
ATCCTGGCCACGGAGAATGATTACTGTAAGCTCTGTGATGCCTCCTTCAGTTCCCCAGCTGTGGCTCAGG
CTCACTATCAAGGGAAGAATCATGCCAAGAGGCTGCGGCTGGCGGAAGCTCAGAGTAACTCATTCTCGGA
ATCCTCAGAGCTGGGTCAACGGCGGGCCAGGAAAGAAGGGAATGAGTTTAAGATGATGCCTAACAGGAGA
AATATGTATACAGTACAGAATAATTCAGCAGGTCCTTACTTCAATCCCCGCTCTCGGCAGAGAATTCCAC
GTGATCTGGCCATGTGTGTTACTCCAAGTGGCCAGTTTTACTGCTCAATGTGTAATGTTGGAGCTGGCGA
AGAGATGGAATTCCGGCAGCATTTAGAGAGCAAGCAACATAAGAGCAAGGTGTCTGAACAGCGGTACAGG
AATGAGATGGAGAATCTGGGATATGTATAG

Translation (289 aa):
MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQDCALEELCKPL
YCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPAATPVVPVPPQMGSFKPGGRV
ILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEAQSNSFSESSELGQRRARKEGNEFKMMPNRR
NMYTVQNNSAGPYFNPRSRQRIPRDLAMCVTPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYR
NEMENLGYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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