NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS90871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90871.1 Public Homo sapiens 1 EMC1 24 110 108 CCDS HistoryNCBI Gene:23065Re-query CCDS DB by CCDS ID:90871.1Re-query CCDS DB by GeneID:23065See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90871.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000486405.2 ENSP00000419345.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000486405.2Link to Ensembl Protein Viewer:ENSP00000419345.2Re-query CCDS DB by Nucleotide ID:ENST00000486405Re-query CCDS DB by Protein ID:ENSP00000419345
Original member Current member NCBI NM_001375820.1 NP_001362749.1 Accepted alive Link to Nucleotide Sequence:NM_001375820.1Link to Protein Sequence:NP_001362749.1Re-query CCDS DB by Nucleotide ID:NM_001375820Re-query CCDS DB by Protein ID:NP_001362749Link to BLAST:NP_001362749.1

Chromosomal Locations for CCDS 90871.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 19219303 19219482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19219569 19219698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19220764 19220848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19222624 19222834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19223396 19223569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19227313 19227450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19230844 19230963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19231261 19231422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19232624 19232773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19232936 19233135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19234180 19234188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19235130 19235252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19237142 19237238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19238017 19238139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19238795 19238857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19239231 19239302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19239818 19239985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19240297 19240446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19241016 19241142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19242345 19242473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19243614 19243707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19243950 19244015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19244906 19245030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19251415 19251509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2991 nt):
ATGGCGGCTGAGTGGGCTTCTCGTTTCTGGCTTTGGGCTACGCTGCTGATTCCTGCGGCCGCGGTCTACG
AAGACCAAGTGGGCAAGTTTGATTGGAGACAGCAATATGTTGGGAAGGTCAAGTTTGCCTCCTTGGAATT
TTCCCCTGGATCCAAGAAGTTGGTTGTAGCCACAGAGAAGAATGTGATTGCAGCATTAAATTCCCGAACT
GGGGAGATCTTGTGGCGCCATGTTGACAAGGGCACGGCAGAAGGGGCTGTGGATGCCATGCTGCTGCACG
GACAGGATGTGATCACTGTGTCCAATGGAGGCCGAATCATGCGTTCCTGGGAGACTAACATCGGGGGCCT
GAACTGGGAGATAACCCTGGACAGTGGCAGTTTCCAGGCACTTGGGCTGGTTGGCCTGCAGGAGTCTGTA
AGGTACATCGCAGTCCTGAAGAAGACTACACTTGCCCTCCATCACCTCTCCAGTGGGCACCTCAAGTGGG
TGGAACATCTCCCAGAAAGTGACAGCATCCACTACCAGATGGTGTATTCTTACGGCTCTGGGGTGGTGTG
GGCCCTCGGAGTTGTTCCCTTCAGCCATGTGAACATTGTCAAGTTTAATGTGGAAGATGGAGAGATTGTT
CAGCAGGTTAGGGTTTCAACTCCGTGGCTGCAGCACCTGTCTGGAGCCTGTGGTGTGGTGGATGAGGCTG
TCCTGGTGTGTCCTGACCCGAGCTCACGTTCCCTCCAAACTTTGGCTCTGGAGACGGAATGGGAGTTGAG
ACAGATCCCACTGCAGTCTCTCGACTTAGAATTTGGAAGTGGATTCCAACCCCGGGTCCTGCCTACCCAG
CCCAACCCAGTGGACGCTTCCCGGGCCCAGTTCTTCCTGCACTTGTCCCCAAGCCACTATGCTCTGCTGC
AGTACCATTATGGAACGCTGAGTTTGCTTAAAAACTTCCCACAGACTGCCCTAGTGAGCTTTGCCACCAC
TGGGGAGAAGACGGTGGCTGCAGTCATGGCCTGTCGGAATGAAGTGCAGAAAAGTAGCAGTTCTGAAGAT
GGGTCAATGGGGAGCTTTTCGGAGAAGTCTAGTTCAAAGGACTCTCTGGCTTGCTTCAATCAGACCTACA
CCATTAACCTATACCTCGTGGAGACAGGTCGGCGGCTGCTGGACACCACGATAACATTTAGCCTGGAACA
GAGCGGCACTCGGCCTGAGCGGCTGTATATCCAGGTGTTCTTGAAGAAGGATGACTCAGTGGGCTACCGG
GCTTTGGTGCAGACAGAGGATCATCTGCTACTTTTCCTGCAGCAGTTGGCAGGGAAGGTGGTGCTGTGGA
GCCGTGAGGAGTCCCTGGCAGAAGTGGTGTGCCTAGAGATGGTGGACCTCCCCCTGACTGGGGCACAGGC
CGAGCTGGAAGGAGAATTTGGCAAAAAGGCAGCAATTCAAGATGGCTTGCTGGGGATGTTCCTGAAACGC
CTCTCGTCTCAGCTTATCCTGCTGCAAGCATGGACTTCCCACCTCTGGAAAATGTTTTATGATGCTCGGA
AGCCCCGGAGTCAGATTAAGAATGAGATCAACATTGACACCCTGGCCAGAGATGAATTCAACCTCCAGAA
GATGATGGTGATGGTAACAGCCTCAGGCAAGCTTTTTGGCATTGAGAGCAGCTCTGGCACCATCCTGTGG
AAACAGTATCTACCCAATGTCAAGCCAGACTCCTCCTTTAAACTGATGGTCCAGAGAACTACTGCTCATT
TCCCCCATCCCCCACAGTGCACCCTGCTGGTGAAGGACAAGGAGTCGGGAATGAGTTCTCTGTATGTCTT
CAATCCCATTTTTGGGAAGTGGAGTCAGGTAGCTCCCCCAGTGCTGAAGCGCCCCATCTTGCAGTCCTTG
CTTCTCCCAGTCATGGATCAAGACTACGCCAAGGTGTTGCTGTTGATAGATGATGAATACAAGGTCACAG
CTTTTCCAGCCACTCGGAATGTCTTGCGACAGCTACATGAGCTTGCCCCTTCCATCTTCTTCTATTTGGT
GGATGCAGAGCAGGGACGGCTGTGTGGATATCGGCTTCGAAAGGATCTCACCACTGAGCTGAGTTGGGAG
CTGACCATTCCCCCAGAAGTACAGCGGATCGTCAAGGTGAAGGGGAAACGCAGCAGTGAGCACGTTCATT
CCCAGGGCCGTGTGATGGGGGACCGCAGTGTGCTCTACAAGAGCCTGAACCCCAACCTGCTGGCCGTGGT
GACAGAGAGCACAGACGCGCACCATGAGCGCACCTTTATTGGCATCTTCCTCATTGATGGCGTCACTGGG
CGTATCATTCACTCCTCTGTGCAGAAGAAAGCCAAAGGCCCTGTCCATATCGTGCATTCAGAGAACTGGG
TGGTGTACCAGTACTGGAACACCAAGGCTCGGCGCAACGAGTTTACCGTACTGGAGCTCTATGAGGGCAC
TGAGCAATACAACGCCACCGCCTTCAGCTCCCTGGACCGCCCCCAGCTGCCCCAGGTCCTCCAGCAGTCC
TATATCTTCCCGTCCTCCATCAGTGCCATGGAGGCCACCATCACCGAACGGGGCATCACCAGCCGACACC
TGCTGATTGGACTACCTTCTGGAGCAATTCTTTCCCTTCCTAAGGCTTTGCTGGATCCCCGCCGCCCCGA
GATCCCAACAGAACAAAGCAGAGAGGAGAACTTAATCCCGTATTCTCCAGATGTACAGATACACGCAGAG
CGATTCATCAACTATAACCAGACAGTTTCTCGAATGCGAGGTATCTACACAGCTCCCTCGGGTCTGGAGT
CCACTTGTTTGGTTGTGGCCTATGGTTTGGACATTTACCAAACTCGAGTCTACCCATCCAAGCAGTTTGA
CGTTCTGAAGGATGACTATGACTACGTGTTAATCAGCAGCGTCCTCTTTGGCCTGGTTTTTGCCACCATG
ATCACTAAGAGACTGGCACAGGTGAAGCTCCTGAATCGGGCCTGGCGATAA

Translation (996 aa):
MAAEWASRFWLWATLLIPAAAVYEDQVGKFDWRQQYVGKVKFASLEFSPGSKKLVVATEKNVIAALNSRT
GEILWRHVDKGTAEGAVDAMLLHGQDVITVSNGGRIMRSWETNIGGLNWEITLDSGSFQALGLVGLQESV
RYIAVLKKTTLALHHLSSGHLKWVEHLPESDSIHYQMVYSYGSGVVWALGVVPFSHVNIVKFNVEDGEIV
QQVRVSTPWLQHLSGACGVVDEAVLVCPDPSSRSLQTLALETEWELRQIPLQSLDLEFGSGFQPRVLPTQ
PNPVDASRAQFFLHLSPSHYALLQYHYGTLSLLKNFPQTALVSFATTGEKTVAAVMACRNEVQKSSSSED
GSMGSFSEKSSSKDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQSGTRPERLYIQVFLKKDDSVGYR
ALVQTEDHLLLFLQQLAGKVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKAAIQDGLLGMFLKR
LSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVTASGKLFGIESSSGTILW
KQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKESGMSSLYVFNPIFGKWSQVAPPVLKRPILQSL
LLPVMDQDYAKVLLLIDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWE
LTIPPEVQRIVKVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDAHHERTFIGIFLIDGVTG
RIIHSSVQKKAKGPVHIVHSENWVVYQYWNTKARRNEFTVLELYEGTEQYNATAFSSLDRPQLPQVLQQS
YIFPSSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAE
RFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATM
ITKRLAQVKLLNRAWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH