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Report for CCDS6851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6851.1 Public Homo sapiens 9 STRBP 24 110 108 CCDS HistoryNCBI Gene:55342Re-query CCDS DB by CCDS ID:6851.1Re-query CCDS DB by GeneID:55342See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6851.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000348403.10 ENSP00000321347.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000348403.10Link to Ensembl Protein Viewer:ENSP00000321347.7Re-query CCDS DB by Nucleotide ID:ENST00000348403Re-query CCDS DB by Protein ID:ENSP00000321347
Original member Current member EBI ENST00000447404.6 ENSP00000415968.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447404.6Link to Ensembl Protein Viewer:ENSP00000415968.2Re-query CCDS DB by Nucleotide ID:ENST00000447404Re-query CCDS DB by Protein ID:ENSP00000415968
Original member Current member NCBI NM_001376106.1 NP_001363035.1 Accepted alive Link to Nucleotide Sequence:NM_001376106.1Link to Protein Sequence:NP_001363035.1Re-query CCDS DB by Nucleotide ID:NM_001376106Re-query CCDS DB by Protein ID:NP_001363035Link to BLAST:NP_001363035.1
Original member Current member NCBI NM_001376107.1 NP_001363036.1 Accepted alive Link to Nucleotide Sequence:NM_001376107.1Link to Protein Sequence:NP_001363036.1Re-query CCDS DB by Nucleotide ID:NM_001376107Re-query CCDS DB by Protein ID:NP_001363036Link to BLAST:NP_001363036.1
Original member Current member NCBI NM_018387.5 NP_060857.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018387.5Link to Protein Sequence:NP_060857.2Re-query CCDS DB by Nucleotide ID:NM_018387Re-query CCDS DB by Protein ID:NP_060857Link to BLAST:NP_060857.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001363035.1 672 Q96SI9-1 672 100% 0 0
NP_001363036.1 672 Q96SI9-1 672 100% 0 0
NP_060857.2 672 Q96SI9-1 672 100% 0 0

Chromosomal Locations for CCDS 6851.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123125597 123125673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123128214 123128258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123132845 123132968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123136041 123136181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123136381 123136515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123139529 123139687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123146855 123147054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123147778 123147870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123158012 123158123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123158332 123158429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123159096 123159207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123160367 123160462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123160977 123161068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123169902 123170046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123173677 123173842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123179007 123179227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123184132 123184134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGAGATCTATTCGATCTTTTGCTAATGATGATCGCCATGTTATGGTGAAACATTCAACAATCTATCCAT
CTCCGGAGGAACTTGAAGCTGTTCAGAATATGGTATCTACTGTTGAATGTGCTCTTAAACATGTCTCAGA
TTGGTTGGATGAAACAAATAAAGGCACAAAAACAGAGGGTGAGACAGAAGTGAAGAAAGATGAGGCCGGA
GAAAACTATTCCAAGGATCAAGGTGGTCGGACATTGTGTGGTGTAATGAGGATTGGCCTGGTTGCAAAAG
GCTTGCTGATTAAAGATGATATGGACTTGGAGCTGGTTTTAATGTGCAAAGACAAACCCACAGAGACCCT
GTTAAATACAGTCAAAGATAATCTTCCTATTCAGATTCAGAAACTCACAGAAGAGAAATATCAAGTGGAA
CAATGTGTAAATGAGGCATCTATTATAATTCGGAATACAAAAGAGCCCACGCTAACTTTGAAGGTGATAC
TTACCTCACCTCTAATTAGGGACGAATTGGAGAAGAAGGATGGAGAAAATGTTTCGATGAAAGATCCTCC
GGACTTATTGGACAGGCAGAAATGCCTGAACGCCTTGGCGTCTCTTCGACATGCCAAATGGTTTCAGGCA
AGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTCCCCA
CATGGGCACCATTGAAAGGATGGCCACTAGAACTTATATGTGAAAAGTCTATAGGTACTTGTAATAGACC
TTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTGGAATACTACTTCCTGGGGGT
CCTGGTCTTCATGATCCTTGTGAGCGAGACCCAACAGATGCTCTGAGCTATATGACCATCCAGCAAAAAG
AAGATATTACCCACAGTGCACAGCATGCACTCAGACTATCAGCCTTTGGCCAGATTTACAAAGTGCTGGA
GATGGACCCCCTTCCATCTAGTAAGCCTTTTCAGAAGTATTCCTGGTCAGTTACTGATAAAGAAGGTGCT
GGGTCTTCAGCTCTAAAGAGGCCATTTGAAGATGGATTAGGGGATGATAAAGACCCCAACAAGAAGATGA
AACGAAACTTAAGGAAAATTCTGGATAGTAAAGCAATAGACCTTATGAATGCACTAATGAGGCTAAATCA
GATCAGGCCTGGGCTTCAGTATAAGCTCCTATCTCAGTCTGGCCCCGTTCATGCCCCAGTCTTCACAATG
TCTGTAGATGTGGATGGCACAACATATGAAGCCTCAGGACCATCCAAGAAAACAGCAAAACTTCACGTAG
CGGTGAAGGTATTGCAGGCAATGGGATATCCAACAGGCTTTGATGCAGATATTGAATGTATGAGTTCCGA
TGAAAAATCAGATAATGAAAGTAAAAATGAAACAGTGTCTTCAAACTCAAGCAATAATACTGGAAATTCT
ACAACTGAAACCTCCAGTACCTTAGAGGTAAGAACTCAGGGCCCTATCCTCACAGCAAGTGGCAAAAACC
CTGTAATGGAGCTCAATGAAAAAAGAAGAGGTCTCAAGTATGAACTCATCTCAGAGACTGGTGGAAGCCA
TGACAAGCGCTTTGTAATGGAGGTAGAAGTAGATGGACAGAAATTCAGAGGCGCAGGTCCAAATAAGAAA
GTGGCAAAGGCGAGTGCAGCTTTAGCTGCCTTGGAGAAACTGTTTTCTGGACCCAATGCGGCAAATAATA
AGAAAAAGAAGATTATCCCTCAGGCAAAGGGCGTTGTGAATACAGCTGTGTCTGCAGCAGTCCAAGCTGT
TCGGGGCAGAGGAAGAGGAACTCTAACAAGGGGAGCTTTTGTTGGGGCGACAGCTGCTCCTGGCTACATA
GCTCCAGGCTATGGAACACCATATGGTTACAGCACAGCTGCCCCTGCCTATGGTTTACCCAAGAGAATGG
TTCTGTTACCCGTTATGAAATTTCCAACATATCCTGTTCCCCACTACTCATTCTTTTAG

Translation (672 aa):
MRSIRSFANDDRHVMVKHSTIYPSPEELEAVQNMVSTVECALKHVSDWLDETNKGTKTEGETEVKKDEAG
ENYSKDQGGRTLCGVMRIGLVAKGLLIKDDMDLELVLMCKDKPTETLLNTVKDNLPIQIQKLTEEKYQVE
QCVNEASIIIRNTKEPTLTLKVILTSPLIRDELEKKDGENVSMKDPPDLLDRQKCLNALASLRHAKWFQA
RANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSIGTCNRPLGAGEALRRVMECLASGILLPGG
PGLHDPCERDPTDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQKYSWSVTDKEGA
GSSALKRPFEDGLGDDKDPNKKMKRNLRKILDSKAIDLMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTM
SVDVDGTTYEASGPSKKTAKLHVAVKVLQAMGYPTGFDADIECMSSDEKSDNESKNETVSSNSSNNTGNS
TTETSSTLEVRTQGPILTASGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKK
VAKASAALAALEKLFSGPNAANNKKKKIIPQAKGVVNTAVSAAVQAVRGRGRGTLTRGAFVGATAAPGYI
APGYGTPYGYSTAAPAYGLPKRMVLLPVMKFPTYPVPHYSFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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