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Report for CCDS7862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7862.1 Public Homo sapiens 11 BBOX1 24 110 108 CCDS HistoryNCBI Gene:8424Re-query CCDS DB by CCDS ID:7862.1Re-query CCDS DB by GeneID:8424See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7862.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263182.8 ENSP00000263182.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263182.8Link to Ensembl Protein Viewer:ENSP00000263182.3Re-query CCDS DB by Nucleotide ID:ENST00000263182Re-query CCDS DB by Protein ID:ENSP00000263182
Original member Current member EBI ENST00000525090.1 ENSP00000433772.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525090.1Link to Ensembl Protein Viewer:ENSP00000433772.1Re-query CCDS DB by Nucleotide ID:ENST00000525090Re-query CCDS DB by Protein ID:ENSP00000433772
Original member Current member EBI ENST00000528583.5 ENSP00000434918.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000528583.5Link to Ensembl Protein Viewer:ENSP00000434918.1Re-query CCDS DB by Nucleotide ID:ENST00000528583Re-query CCDS DB by Protein ID:ENSP00000434918
Original member Current member EBI ENST00000529202.5 ENSP00000435781.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529202.5Link to Ensembl Protein Viewer:ENSP00000435781.1Re-query CCDS DB by Nucleotide ID:ENST00000529202Re-query CCDS DB by Protein ID:ENSP00000435781
Original member Current member NCBI NM_001376258.1 NP_001363187.1 Accepted alive Link to Nucleotide Sequence:NM_001376258.1Link to Protein Sequence:NP_001363187.1Re-query CCDS DB by Nucleotide ID:NM_001376258Re-query CCDS DB by Protein ID:NP_001363187Link to BLAST:NP_001363187.1
Original member Current member NCBI NM_001376259.1 NP_001363188.1 Accepted alive Link to Nucleotide Sequence:NM_001376259.1Link to Protein Sequence:NP_001363188.1Re-query CCDS DB by Nucleotide ID:NM_001376259Re-query CCDS DB by Protein ID:NP_001363188Link to BLAST:NP_001363188.1
Original member Current member NCBI NM_001376260.1 NP_001363189.1 Accepted alive Link to Nucleotide Sequence:NM_001376260.1Link to Protein Sequence:NP_001363189.1Re-query CCDS DB by Nucleotide ID:NM_001376260Re-query CCDS DB by Protein ID:NP_001363189Link to BLAST:NP_001363189.1
Original member Current member NCBI NM_001376261.1 NP_001363190.1 Accepted alive Link to Nucleotide Sequence:NM_001376261.1Link to Protein Sequence:NP_001363190.1Re-query CCDS DB by Nucleotide ID:NM_001376261Re-query CCDS DB by Protein ID:NP_001363190Link to BLAST:NP_001363190.1
Original member Current member NCBI NM_003986.3 NP_003977.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003986.3Link to Protein Sequence:NP_003977.1Re-query CCDS DB by Nucleotide ID:NM_003986Re-query CCDS DB by Protein ID:NP_003977Link to BLAST:NP_003977.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001363187.1 387 O75936 387 100% 0 0
NP_001363188.1 387 O75936 387 100% 0 0
NP_001363189.1 387 O75936 387 100% 0 0
NP_001363190.1 387 O75936 387 100% 0 0
NP_003977.1 387 O75936 387 100% 0 0

Chromosomal Locations for CCDS 7862.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 27055431 27055649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 27057201 27057315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 27093168 27093366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 27115452 27115557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 27119649 27119845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 27125654 27125820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 27127293 27127453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGGCTTGTACCATCCAAAAGGCAGAAGCACTTGACGGGGCTCATTTGATGCAGATCCTCTGGTATGATG
AGGAAGAGTCTCTCTACCCAGCTGTATGGTTGAGAGACAACTGTCCGTGCTCTGATTGCTACCTGGATTC
TGCAAAAGCACGGAAACTTCTAGTGGAAGCTCTTGATGTGAACATTGGAATTAAAGGCTTGATATTTGAC
AGAAAAAAGGTGTACATCACATGGCCCGATGAGCATTACAGTGAATTCCAGGCTGATTGGCTGAAGAAAA
GATGCTTTTCCAAGCAGGCCAGAGCAAAGCTCCAAAGAGAATTGTTTTTTCCAGAATGCCAATACTGGGG
CTCAGAGCTCCAGCTACCCACTTTGGATTTTGAAGATGTTTTAAGATATGATGAACACGCATACAAGTGG
CTCTCCACCCTCAAGAAAGTAGGCATAGTAAGACTCACCGGAGCATCTGACAAACCAGGAGAAGTTTCAA
AACTTGGGAAAAGGATGGGTTTCCTCTATCTCACATTTTATGGACATACTTGGCAAGTGCAAGACAAAAT
CGATGCAAACAATGTGGCTTACACAACTGGGAAGCTAAGCTTTCACACTGATTATCCAGCCCTCCATCAT
CCACCTGGGGTTCAGCTTCTTCACTGCATAAAGCAAACAGTCACAGGGGGTGATTCAGAAATTGTAGATG
GGTTTAATGTGTGCCAAAAACTAAAGAAAAATAATCCTCAGGCATTCCAGATTTTGTCCTCTACCTTTGT
GGACTTTACAGACATTGGAGTGGATTACTGTGATTTTTCTGTACAATCAAAACATAAAATTATAGAGTTA
GATGATAAAGGCCAAGTGGTTCGCATCAACTTCAATAACGCAACTAGGGACACAATATTTGATGTGCCTG
TTGAAAGAGTTCAGCCTTTTTATGCTGCTCTGAAGGAGTTTGTTGACCTCATGAACAGCAAAGAATCCAA
GTTTACCTTCAAGATGAATCCAGGTGATGTGATTACTTTTGATAACTGGCGCTTACTTCATGGCCGACGT
AGCTATGAAGCAGGAACTGAGATATCCCGCCATCTAGAAGGAGCTTATGCTGACTGGGATGTGGTCATGT
CAAGGCTTCGTATCTTAAGGCAGAGGGTGGAGAATGGAAACTGA

Translation (387 aa):
MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFD
RKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSELQLPTLDFEDVLRYDEHAYKW
LSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHTWQVQDKIDANNVAYTTGKLSFHTDYPALHH
PPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIEL
DDKGQVVRINFNNATRDTIFDVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRR
SYEAGTEISRHLEGAYADWDVVMSRLRILRQRVENGN


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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