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Report for CCDS90972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90972.1 Public Homo sapiens 1 SGIP1 24 110 108 CCDS HistoryNCBI Gene:84251Re-query CCDS DB by CCDS ID:90972.1Re-query CCDS DB by GeneID:84251See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90972.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000684539.1 ENSP00000507311.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684539.1Link to Ensembl Protein Viewer:ENSP00000507311.1Re-query CCDS DB by Nucleotide ID:ENST00000684539Re-query CCDS DB by Protein ID:ENSP00000507311
Original member Current member EBI ENST00000683257.1 ENSP00000507967.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683257.1Link to Ensembl Protein Viewer:ENSP00000507967.1Re-query CCDS DB by Nucleotide ID:ENST00000683257Re-query CCDS DB by Protein ID:ENSP00000507967
Original member Current member NCBI NM_001376551.1 NP_001363480.1 Accepted alive Link to Nucleotide Sequence:NM_001376551.1Link to Protein Sequence:NP_001363480.1Re-query CCDS DB by Nucleotide ID:NM_001376551Re-query CCDS DB by Protein ID:NP_001363480Link to BLAST:NP_001363480.1
Original member Current member NCBI NM_001376552.1 NP_001363481.1 Accepted alive Link to Nucleotide Sequence:NM_001376552.1Link to Protein Sequence:NP_001363481.1Re-query CCDS DB by Nucleotide ID:NM_001376552Re-query CCDS DB by Protein ID:NP_001363481Link to BLAST:NP_001363481.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001363480.1 629 Q9BQI5-4 629 100% 0 0
NP_001363481.1 629 Q9BQI5-4 629 100% 0 0

Chromosomal Locations for CCDS 90972.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 66534359 66534368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66625847 66625910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66633070 66633094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66639777 66639833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66642810 66642864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66643544 66643719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66670995 66671019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66671944 66671995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66673281 66673366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66677004 66677096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66679678 66679752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66689148 66689275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66690190 66690316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66695434 66695493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66719294 66719405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66729264 66729419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66733748 66733880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66739335 66739537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66740658 66740722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66741272 66741436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66743073 66743095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1890 nt):
ATGATGGAAGGATTGAAAAAACGTACAAGGAAGGCCTTTGGAATACGGAAGAAAGAAAAGGACACTGATT
CTACAGGTTCACCAGATAGAGATGGAATTAAGAAAAGCAATGGGGCACCAAATGGATTTTATGCGGAAAT
TGATTGGGAAAGATATAACTCACCTGAGCTGGATGAAGAAGGCTACAGCATCAGACCCGAGGAACCCGGC
TCTACCAAAGGAAAGCACTTTTATTCTTCAAGTGAATCGGAAGAAGAAGAAGAATCACATAAGAAATTTA
ATATCAAGATTAAACCATTGCAATCTAAAGACATTCTTAAGAATGCTGCAACTGTAGATGAATTGAAGGC
ATCAATAGGCAACATCGCACTTTCCCCATCACCAGTGGGTGCAATTAAAAGGAACTTATCCAGTGAAGAA
GTGGCAAGACCCAGGCGTTCCACACCAACTCCAGAACTTATAAGCAAAAAGCCTCCAGATGACACTACGG
CCCTTGCTCCTCTCTTTGGCCCACCACTAGAATCAGCTTTTGATGAACAGAAGACAGAAGTTCTTTTAGA
TCAGCCTGAGATATGGGGTTCAGGCCAACCAATTAATCCAAGCATGGAGTCGCCAAAGTTAACAAGGCCT
TTTCCCACTGGAACACCTCCACCACTGCCTCCAAAAAATGTACCAGCTACCCCACCCCGAACAGGATCCC
CCTTAACAATTGGACCAGGTGCATCATCCCCTGCTCGACCAGCCACTCCTTTGGTTCCTTGCAGAAGTAC
CACTCCACCTCCACCTCCTCCCCGGCCTCCATCCCGGCCAAAGCTACCTCCAGGAAAACCTGGAGTTGGA
GATGTGTCCAGACCTTTTAGCCCTCCCATTCATTCTTCCAGCCCTCCTCCAATAGCACCCTTAGCGCGGG
CTGAAAGCACTTCTTCAATATCGTCAACCAATTCCTTGAGCGCAGCCACCACTCCCACAGTTGAGAATGA
ACAGCCTTCCCTCGTTTGGTTTGACAGAGGAAAGTTTTATTTGACTTTTGAAGGTTCTTCCAGGGGACCC
AGCCCCCTAACCATGGGAGCTCAGGACACTCTCCCTGTTGCAGCAGCATTTACAGAAACAGTCAATGCCT
ATTTCAAAGGAGCAGACCCAAGCAAATGTATCGTTAAGATTACCGGAGAAATGGTGTTGTCATTTCCTGC
TGGCATCACCAGACACTTTGCCAACAACCCGTCCCCAGCTGCTCTGACTTTTCGGGTGATAAATTTCAGC
AGGTTAGAACACGTCCTGCCAAACCCCCAACTTCTCTGCTGTGATAATACACAAAATGATGCCAATACCA
AGGAATTCTGGGTAAACATGCCAAATTTGATGACTCACCTAAAGAAAGTGTCTGAACAAAAACCCCAGGC
TACATATTATAACGTTGACATGCTCAAATATCAGGTGTCTGCCCAGGGCATTCAGTCCACACCTCTGAAC
CTGGCAGTGAATTGGCGATGTGAGCCTTCAAGCACTGACCTGCGCATAGATTACAAATATAATACAGATG
CAATGACGACTGCTGTGGCCCTCAACAATGTGCAGTTCCTGGTCCCCATCGACGGAGGAGTCACCAAGCT
CCAGGCAGTGCTCCCACCAGCAGTCTGGAATGCTGAACAACAGAGAATATTGTGGAAGATTCCTGATATC
TCTCAGAAGTCAGAAAATGGAGGGGTGGGTTCTTTGTTGGCAAGATTTCAGTTATCTGAAGGCCCAAGCA
AACCTTCTCCATTGGTTGTGCAGTTCACAAGTGAAGGAAGCACCCTTTCTGGCTGTGACATTGAACTTGT
TGGAGCAGGGTATCGATTTTCACTCATCAAGAAAAGGTTTGCTGCAGGAAAATACTTGGCAGATAACTAA

Translation (629 aa):
MMEGLKKRTRKAFGIRKKEKDTDSTGSPDRDGIKKSNGAPNGFYAEIDWERYNSPELDEEGYSIRPEEPG
STKGKHFYSSSESEEEEESHKKFNIKIKPLQSKDILKNAATVDELKASIGNIALSPSPVGAIKRNLSSEE
VARPRRSTPTPELISKKPPDDTTALAPLFGPPLESAFDEQKTEVLLDQPEIWGSGQPINPSMESPKLTRP
FPTGTPPPLPPKNVPATPPRTGSPLTIGPGASSPARPATPLVPCRSTTPPPPPPRPPSRPKLPPGKPGVG
DVSRPFSPPIHSSSPPPIAPLARAESTSSISSTNSLSAATTPTVENEQPSLVWFDRGKFYLTFEGSSRGP
SPLTMGAQDTLPVAAAFTETVNAYFKGADPSKCIVKITGEMVLSFPAGITRHFANNPSPAALTFRVINFS
RLEHVLPNPQLLCCDNTQNDANTKEFWVNMPNLMTHLKKVSEQKPQATYYNVDMLKYQVSAQGIQSTPLN
LAVNWRCEPSSTDLRIDYKYNTDAMTTAVALNNVQFLVPIDGGVTKLQAVLPPAVWNAEQQRILWKIPDI
SQKSENGGVGSLLARFQLSEGPSKPSPLVVQFTSEGSTLSGCDIELVGAGYRFSLIKKRFAAGKYLADN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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