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Report for CCDS54906.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54906.1 Public Homo sapiens 5 TRPC7 24 110 108 CCDS HistoryNCBI Gene:57113Re-query CCDS DB by CCDS ID:54906.1Re-query CCDS DB by GeneID:57113See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54906.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378459.7 ENSP00000367720.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378459.7Link to Ensembl Protein Viewer:ENSP00000367720.3Re-query CCDS DB by Nucleotide ID:ENST00000378459Re-query CCDS DB by Protein ID:ENSP00000367720
Original member Current member NCBI NM_001167577.2 NP_001161049.1 Accepted alive Link to Nucleotide Sequence:NM_001167577.2Link to Protein Sequence:NP_001161049.1Re-query CCDS DB by Nucleotide ID:NM_001167577Re-query CCDS DB by Protein ID:NP_001161049Link to BLAST:NP_001161049.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161049.1 801 Q9HCX4-3 801 100% 0 0

Chromosomal Locations for CCDS 54906.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136213435 136213604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136216200 136216275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136225274 136225354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136226034 136226255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136231354 136231549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136247471 136247735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136251649 136251882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136266220 136266436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136274673 136274837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136356608 136357385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136365253 136365254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2406 nt):
ATGTTGAGGAACAGCACCTTCAAAAACATGCAGCGCCGGCACACAACGCTGAGGGAGAAGGGCCGTCGCC
AGGCCATCCGGGGTCCCGCCTACATGTTCAACGAGAAGGGCACCAGTCTGACGCCCGAGGAGGAGCGCTT
CCTGGACTCGGCTGAGTATGGCAACATCCCGGTGGTCCGGAAAATGCTGGAGGAGTCCAAGACCCTTAAC
TTCAACTGTGTGGACTACATGGGGCAGAACGCTCTGCAGCTGGCCGTGGGCAACGAGCACCTAGAGGTCA
CGGAGCTGCTGCTGAAGAAGGAGAACCTGGCACGGGTGGGGGACGCGCTGCTGCTGGCCATCAGCAAGGG
CTATGTGCGCATCGTGGAGGCCATCCTCAACCACCCGGCCTTCGCGCAGGGCCAGCGCCTGACGCTCAGC
CCGCTGGAACAGGAGCTGCGCGACGACGACTTCTATGCCTACGACGAGGACGGCACGCGCTTCTCCCACG
ACATCACGCCCATCATCCTGGCGGCGCACTGCCAGGAGTATGAGATCGTGCACATCCTGCTGCTCAAGGG
CGCCCGCATCGAGCGGCCCCACGACTACTTCTGCAAGTGCAATGAGTGCACCGAGAAACAGCGGAAAGAC
TCCTTCAGCCACTCGCGCTCGCGCATGAACGCCTACAAAGGACTGGCGAGTGCTGCCTACTTGTCCCTGT
CCAGCGAAGACCCTGTCCTCACCGCCCTGGAGCTCAGCAACGAGTTAGCCAGACTAGCCAACATTGAGAC
TGAATTTAAGTTCGTTGCTCATCCTAACTGTCAGCAGCAATTGCTTACCATGTGGTATGAAAATCTCTCA
GGCTTACGTCAACAGTCTATCGCTGTGAAATTCCTGGCTGTCTTTGGAGTCTCCATAGGCCTCCCTTTTC
TCGCCATAGCCTATTGGATTGCTCCGTGCAGCAAGCTAGGACGAACCCTGAGGAGCCCTTTCATGAAGTT
TGTAGCTCATGCAGTTTCTTTTACAATCTTCTTGGGATTATTAGTTGTGAATGCATCTGACCGATTTGAA
GGTGTTAAAACCCTGCCAAACGAAACCTTCACAGACTACCCAAAACAAATCTTCAGAGTGAAAACCACAC
AGTTCTCCTGGACAGAAATGCTCATTATGAAGTGGGTCTTAGGAATGATTTGGTCCGAATGCAAGGAAAT
CTGGGAGGAGGGGCCACGGGAGTACGTGCTGCACTTGTGGAACCTGCTAGATTTCGGGATGCTGTCCATC
TTCGTGGCCTCCTTCACAGCACGCTTCATGGCCTTCCTGAAGGCCACGGAGGCACAGCTGTACGTGGACC
AGCACGTGCAGGACGACACGCTGCACAATGTCTCGCTTCCGCCGGAAGTGGCATACTTCACCTACGCCAG
GGACAAGTGGTGGCCTTCAGACCCTCAGATCATATCGGAAGGGCTCTACGCGATAGCCGTCGTGCTGAGC
TTCTCTCGCATTGCATACATTCTGCCAGCCAACGAGAGTTTTGGGCCCCTGCAGATCTCGCTAGGGAGAA
CTGTGAAAGATATCTTCAAGTTCATGGTCATTTTCATCATGGTATTTGTGGCCTTCATGATTGGGATGTT
CAACCTGTACTCTTACTACCGAGGTGCCAAATACAACCCAGCGTTTACAACGGTTGAAGAAAGTTTTAAA
ACTTTGTTTTGGTCCATATTCGGCTTATCTGAAGTAATCTCAGTGGTGCTGAAATACGACCACAAATTCA
TCGAGAACATTGGCTACGTTCTCTACGGCGTTTATAACGTCACCATGGTGGTAGTGTTGCTCAACATGCT
AATAGCCATGATAAACAACTCCTATCAGGAAATTGAGGAGGATGCAGATGTGGAATGGAAGTTCGCCCGA
GCAAAACTCTGGCTGTCTTACTTTGATGAAGGAAGAACTCTACCTGCTCCTTTTAATCTAGTGCCAAGTC
CTAAATCATTTTATTATCTCATAATGAGAATCAAGATGTGCCTCATAAAACTCTGCAAATCTAAGGCCAA
AAGCTGTGAAAATGACCTTGAAATGGGCATGCTGAATTCCAAATTCAAGAAGACTCGCTACCAGGCTGGC
ATGAGGAATTCTGAAAATCTGACAGCAAATAACACTTTGAGCAAGCCCACCAGATACCAGAAAATCATGA
AACGGCTCATAAAAAGATACGTCCTGAAAGCCCAGGTGGACAGAGAAAATGACGAAGTCAATGAAGGCGA
GCTGAAGGAAATCAAGCAAGATATCTCCAGCCTGCGCTATGAGCTTCTTGAGGAAAAATCTCAAGCTACT
GGTGAGCTGGCAGACCTGATTCAACAACTCAGCGAGAAGTTTGGAAAGAACTTAAACAAAGACCACCTGA
GGGTGAACAAGGGCAAAGACATTTAG

Translation (801 aa):
MLRNSTFKNMQRRHTTLREKGRRQAIRGPAYMFNEKGTSLTPEEERFLDSAEYGNIPVVRKMLEESKTLN
FNCVDYMGQNALQLAVGNEHLEVTELLLKKENLARVGDALLLAISKGYVRIVEAILNHPAFAQGQRLTLS
PLEQELRDDDFYAYDEDGTRFSHDITPIILAAHCQEYEIVHILLLKGARIERPHDYFCKCNECTEKQRKD
SFSHSRSRMNAYKGLASAAYLSLSSEDPVLTALELSNELARLANIETEFKFVAHPNCQQQLLTMWYENLS
GLRQQSIAVKFLAVFGVSIGLPFLAIAYWIAPCSKLGRTLRSPFMKFVAHAVSFTIFLGLLVVNASDRFE
GVKTLPNETFTDYPKQIFRVKTTQFSWTEMLIMKWVLGMIWSECKEIWEEGPREYVLHLWNLLDFGMLSI
FVASFTARFMAFLKATEAQLYVDQHVQDDTLHNVSLPPEVAYFTYARDKWWPSDPQIISEGLYAIAVVLS
FSRIAYILPANESFGPLQISLGRTVKDIFKFMVIFIMVFVAFMIGMFNLYSYYRGAKYNPAFTTVEESFK
TLFWSIFGLSEVISVVLKYDHKFIENIGYVLYGVYNVTMVVVLLNMLIAMINNSYQEIEEDADVEWKFAR
AKLWLSYFDEGRTLPAPFNLVPSPKSFYYLIMRIKMCLIKLCKSKAKSCENDLEMGMLNSKFKKTRYQAG
MRNSENLTANNTLSKPTRYQKIMKRLIKRYVLKAQVDRENDEVNEGELKEIKQDISSLRYELLEEKSQAT
GELADLIQQLSEKFGKNLNKDHLRVNKGKDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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