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Report for CCDS2968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2968.1 Public Homo sapiens 3 CCDC80 24 110 108 CCDS HistoryNCBI Gene:151887Re-query CCDS DB by CCDS ID:2968.1Re-query CCDS DB by GeneID:151887See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2968.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000206423.8 ENSP00000206423.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000206423.8Link to Ensembl Protein Viewer:ENSP00000206423.3Re-query CCDS DB by Nucleotide ID:ENST00000206423Re-query CCDS DB by Protein ID:ENSP00000206423
Original member Current member EBI ENST00000439685.6 ENSP00000411814.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439685.6Link to Ensembl Protein Viewer:ENSP00000411814.2Re-query CCDS DB by Nucleotide ID:ENST00000439685Re-query CCDS DB by Protein ID:ENSP00000411814
Original member Current member NCBI NM_199511.3 NP_955805.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_199511.3Link to Protein Sequence:NP_955805.1Re-query CCDS DB by Nucleotide ID:NM_199511Re-query CCDS DB by Protein ID:NP_955805Link to BLAST:NP_955805.1
Original member Current member NCBI NM_199512.3 NP_955806.1 Accepted alive Link to Nucleotide Sequence:NM_199512.3Link to Protein Sequence:NP_955806.1Re-query CCDS DB by Nucleotide ID:NM_199512Re-query CCDS DB by Protein ID:NP_955806Link to BLAST:NP_955806.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955805.1 950 Q76M96-1 950 100% 0 0
NP_955806.1 950 Q76M96-1 950 100% 0 0

Chromosomal Locations for CCDS 2968.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 112605417 112605763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112607176 112607256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112609978 112610081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112616710 112616858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112618968 112619104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112630113 112630269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112638028 112639905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGACATGGAGAATGGGACCCCGTTTCACTATGCTGTTGGCCATGTGGCTAGTGTGTGGATCAGAACCCC
ACCCCCATGCCACTATTAGAGGCAGCCACGGAGGACGGAAAGTGCCTTTGGTTTCTCCGGACAGCAGTAG
GCCAGCTCGGTTTCTGAGGCACACTGGGAGGTCTCGCGGAATTGAGAGATCCACTCTGGAGGAACCAAAC
CTTCAGCCTCTCCAGAGAAGGAGGAGTGTGCCCGTGTTGAGACTAGCTCGCCCAACAGAGCCGCCAGCCC
GCTCGGACATCAATGGGGCCGCCGTGAGACCTGAGCAAAGACCAGCAGCCAGGGGCTCTCCGCGTGAGAT
GATCAGAGATGAGGGGTCCTCAGCTCGGTCAAGAATGTTGCGTTTCCCTTCGGGGTCCAGCTCTCCCAAC
ATCCTTGCCAGCTTTGCAGGGAAGAACAGAGTATGGGTCATCTCAGCCCCTCATGCCTCGGAAGGCTACT
ACCGCCTCATGATGAGCCTGCTGAAGGACGATGTGTACTGTGAGCTGGCGGAGAGGCACATCCAACAGAT
TGTGCTCTTCCACCAGGCAGGTGAGGAAGGAGGCAAGGTGAGAAGGATCACCAGCGAGGGCCAGATCCTG
GAGCAGCCCCTGGACCCTAGCCTCATCCCTAAGCTGATGAGCTTCCTGAAGCTGGAGAAGGGCAAGTTTG
GCATGGTGCTGCTGAAGAAGACGCTGCAGGTGGAGGAGCGCTATCCATATCCCGTTAGGCTGGAAGCCAT
GTACGAGGTCATCGACCAAGGCCCCATCCGTAGGATCGAGAAGATCAGGCAGAAGGGCTTTGTCCAGAAA
TGTAAGGCCTCTGGTGTAGAGGGCCAGGTGGTGGCGGAGGGGAATGACGGTGGAGGGGGAGCAGGAAGGC
CAAGCCTGGGCAGCGAGAAGAAGAAAGAGGACCCAAGGAGAGCACAAGTCCCACCAACCAGAGAGAGTCG
GGTGAAGGTCCTGAGAAAACTGGCCGCCACTGCACCAGCTTTGCCCCAACCTCCCTCAACCCCCAGAGCC
ACCACCCTTCCTCCTGCCCCAGCCACAACAGTGACTCGGTCCACGTCCCGGGCGGTAACAGTTGCTGCAA
GACCTATGACCACCACTGCCTTTCCCACCACGCAGAGGCCCTGGACCCCCTCACCCTCCCACAGGCCCCC
TACAACCACTGAGGTGATCACTGCCAGGAGACCCTCAGTTTCAGAGAATCTTTACCCTCCATCCCGGAAG
GATCAGCACAGGGAGAGGCCACAGACAACCAGGAGGCCCAGCAAGGCCACCAGCTTGGAGAGCTTCACAA
ATGCCCCTCCCACCACCATCTCAGAACCCAGCACAAGGGCTGCTGGCCCAGGCCGTTTCCGGGACAACCG
CATGGACAGGCGGGAACATGGCCACCGAGACCCAAATGTGGTGCCAGGTCCTCCCAAGCCAGCAAAGGAG
AAACCTCCCAAAAAGAAGGCCCAGGACAAAATTCTTAGTAATGAGTATGAGGAGAAGTATGACCTCAGCC
GGCCTACTGCCTCTCAGCTGGAGGACGAGCTGCAGGTGGGGAATGTTCCCCTTAAAAAAGCAAAGGAGTC
TAAAAAGCATGAAAAGCTTGAGAAACCAGAGAAGGAGAAGAAAAAAAAGATGAAGAATGAGAACGCAGAC
AAGTTACTTAAGAGTGAAAAGCAAATGAAGAAGTCTGAGAAAAAGAGCAAGCAAGAGAAAGAGAAGAGCA
AGAAGAAAAAAGGAGGTAAAACAGAACAGGATGGCTATCAGAAACCCACCAACAAACACTTCACGCAGAG
TCCCAAGAAGTCAGTGGCCGACCTGCTGGGGTCCTTTGAAGGCAAACGAAGACTCCTTCTGATCACTGCT
CCCAAGGCTGAGAACAATATGTATGTGCAACAACGTGATGAATATCTGGAAAGTTTCTGCAAGATGGCTA
CCAGGAAAATCTCTGTGATCACCATCTTCGGCCCTGTCAACAACAGCACCATGAAAATCGACCACTTTCA
GCTAGATAATGAGAAGCCCATGCGAGTGGTGGATGATGAAGACTTGGTAGACCAGCGTCTCATCAGCGAG
CTGAGGAAAGAGTACGGAATGACCTACAATGACTTCTTCATGGTGCTAACAGATGTGGATCTGAGAGTCA
AGCAATACTATGAGGTACCAATAACAATGAAGTCTGTGTTTGATCTGATCGATACTTTCCAGTCCCGAAT
CAAAGATATGGAGAAGCAGAAGAAGGAGGGCATTGTTTGCAAAGAGGACAAAAAGCAGTCCCTGGAGAAC
TTCCTATCCAGGTTCCGGTGGAGGAGGAGGTTGCTGGTGATCTCTGCTCCTAACGATGAAGACTGGGCCT
ATTCACAGCAGCTCTCTGCCCTCAGTGGTCAGGCGTGCAATTTTGGTCTGCGCCACATAACCATTCTGAA
GCTTTTAGGCGTTGGAGAGGAAGTTGGGGGAGTGTTAGAACTGTTCCCAATTAATGGGAGCTCTGTTGTT
GAGCGAGAAGACGTACCAGCCCATTTGGTGAAAGACATTCGTAACTATTTTCAAGTGAGCCCGGAGTACT
TCTCCATGCTTCTAGTCGGAAAAGACGGAAATGTCAAATCCTGGTATCCTTCCCCAATGTGGTCCATGGT
GATTGTGTACGATTTAATTGATTCGATGCAACTTCGGAGACAGGAAATGGCGATTCAGCAGTCACTGGGG
ATGCGCTGCCCAGAAGATGAGTATGCAGGCTATGGTTACCATAGTTACCACCAAGGATACCAGGATGGTT
ACCAGGATGACTACCGTCATCATGAGAGTTATCACCATGGATACCCTTACTGA

Translation (950 aa):
MTWRMGPRFTMLLAMWLVCGSEPHPHATIRGSHGGRKVPLVSPDSSRPARFLRHTGRSRGIERSTLEEPN
LQPLQRRRSVPVLRLARPTEPPARSDINGAAVRPEQRPAARGSPREMIRDEGSSARSRMLRFPSGSSSPN
ILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQAGEEGGKVRRITSEGQIL
EQPLDPSLIPKLMSFLKLEKGKFGMVLLKKTLQVEERYPYPVRLEAMYEVIDQGPIRRIEKIRQKGFVQK
CKASGVEGQVVAEGNDGGGGAGRPSLGSEKKKEDPRRAQVPPTRESRVKVLRKLAATAPALPQPPSTPRA
TTLPPAPATTVTRSTSRAVTVAARPMTTTAFPTTQRPWTPSPSHRPPTTTEVITARRPSVSENLYPPSRK
DQHRERPQTTRRPSKATSLESFTNAPPTTISEPSTRAAGPGRFRDNRMDRREHGHRDPNVVPGPPKPAKE
KPPKKKAQDKILSNEYEEKYDLSRPTASQLEDELQVGNVPLKKAKESKKHEKLEKPEKEKKKKMKNENAD
KLLKSEKQMKKSEKKSKQEKEKSKKKKGGKTEQDGYQKPTNKHFTQSPKKSVADLLGSFEGKRRLLLITA
PKAENNMYVQQRDEYLESFCKMATRKISVITIFGPVNNSTMKIDHFQLDNEKPMRVVDDEDLVDQRLISE
LRKEYGMTYNDFFMVLTDVDLRVKQYYEVPITMKSVFDLIDTFQSRIKDMEKQKKEGIVCKEDKKQSLEN
FLSRFRWRRRLLVISAPNDEDWAYSQQLSALSGQACNFGLRHITILKLLGVGEEVGGVLELFPINGSSVV
EREDVPAHLVKDIRNYFQVSPEYFSMLLVGKDGNVKSWYPSPMWSMVIVYDLIDSMQLRRQEMAIQQSLG
MRCPEDEYAGYGYHSYHQGYQDGYQDDYRHHESYHHGYPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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