NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8267.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8267.2 Public Homo sapiens 11 TMEM126B 24 110 108 CCDS HistoryNCBI Gene:55863Re-query CCDS DB by CCDS ID:8267.2Re-query CCDS DB by GeneID:55863See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 8267.1
The coding region has been updated to represent an alternative splicing pattern, resulting in an extended N-terminus that is more supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8267.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358867.11 ENSP00000351737.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358867.11Link to Ensembl Protein Viewer:ENSP00000351737.7Re-query CCDS DB by Nucleotide ID:ENST00000358867Re-query CCDS DB by Protein ID:ENSP00000351737
Original member Current member NCBI NM_018480.7 NP_060950.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018480.7Link to Protein Sequence:NP_060950.3Re-query CCDS DB by Nucleotide ID:NM_018480Re-query CCDS DB by Protein ID:NP_060950Link to BLAST:NP_060950.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060950.3 230 Q8IUX1-1 230 100% 0 0

Chromosomal Locations for CCDS 8267.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 85628608 85628688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85631687 85631808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85634086 85634279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85635667 85635778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85636046 85636229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGGTGGTGTTCGGGTATGAGGCTGGGACTAAGCCAAGGGATTCAGGTGTGGTGCCGGTGGGAACTGAGG
AAGCGCCCAAGGTTTTCAAGATGGCAGCATCTATGCATGGTCAGCCCAGTCCTTCTCTAGAAGATGCAAA
ACTCAGAAGACCAATGGTCATAGAAATCATAGAAAAAAATTTTGACTATCTTAGAAAAGAAATGACACAA
AATATATATCAAATGGCGACATTTGGAACAACAGCTGGTTTCTCTGGAATATTCTCAAACTTCCTGTTCA
GACGCTGCTTCAAGGTTAAACATGATGCTTTGAAGACATATGCATCATTGGCTACACTTCCATTTTTGTC
TACTGTTGTTACTGACAAGCTTTTTGTAATTGATGCTTTGTATTCAGATAATATAAGCAAGGAAAACTGT
GTTTTCAGAAGCTCACTGATTGGCATAGTTTGTGGTGTTTTCTATCCCAGTTCTTTGGCTTTTACTAAAA
ATGGACGCCTGGCAACCAAGTATCATACCGTTCCACTGCCACCAAAAGGAAGGGTTTTAATCCATTGGAT
GACGCTTTGTCAAACACAAATGAAATTAATGGCGATTCCTCTAGTCTTTCAGATTATGTTTGGAATATTA
AATGGTCTATACCATTATGCAGTATTTGAAGAGACACTTGAGAAAACTATACATGAAGAGTAA

Translation (230 aa):
MVVFGYEAGTKPRDSGVVPVGTEEAPKVFKMAASMHGQPSPSLEDAKLRRPMVIEIIEKNFDYLRKEMTQ
NIYQMATFGTTAGFSGIFSNFLFRRCFKVKHDALKTYASLATLPFLSTVVTDKLFVIDALYSDNISKENC
VFRSSLIGIVCGVFYPSSLAFTKNGRLATKYHTVPLPPKGRVLIHWMTLCQTQMKLMAIPLVFQIMFGIL
NGLYHYAVFEETLEKTIHEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH