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Report for CCDS11392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11392.1 Public Homo sapiens 17 KRT38 24 110 108 CCDS HistoryNCBI Gene:8687Re-query CCDS DB by CCDS ID:11392.1Re-query CCDS DB by GeneID:8687See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11392.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246646.4 ENSP00000246646.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246646.4Link to Ensembl Protein Viewer:ENSP00000246646.3Re-query CCDS DB by Nucleotide ID:ENST00000246646Re-query CCDS DB by Protein ID:ENSP00000246646
Original member Current member NCBI NM_006771.4 NP_006762.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006771.4Link to Protein Sequence:NP_006762.3Re-query CCDS DB by Nucleotide ID:NM_006771Re-query CCDS DB by Protein ID:NP_006762Link to BLAST:NP_006762.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006762.3 456 O76015 456 100% 0 0

Chromosomal Locations for CCDS 11392.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 41437412 41437541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41438093 41438313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41438491 41438616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41438697 41438858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41439203 41439359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41440161 41440243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41440430 41440921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGACCTCTTCCTACAGCAGCTCCTCATGCCCTCTGGGTTGCACCATGGCTCCTGGAGCAAGAAATGTCT
CTGTCTCTCCCATCGACATTGGGTGCCAGCCTGGGGCAGAGGCCAACATTGCCCCCATGTGCCTTTTGGC
CAACGTGGCACATGCCAACCGAGTCCGTGTGGGGTCCACTCCCCTGGGCCGCCCCAGCCTCTGTCTGCCG
CCTACCTGCCACACTGCTTGTCCCTTGCCAGGGACCTGCCACATTCCTGGCAACATTGGAATCTGTGGGG
CCTATGGTGAAAACACCCTGAATGGCCATGAGAAGGAGACCATGCAGTTCCTGAATGACCGCCTGGCCAA
CTACCTGGAGAAGGTGCGCCAGCTGGAGCAGGAGAATGCGGAGCTGGAGGCCACACTCCTCGAGAGGAGC
AAGTGCCACGAGTCCACCGTGTGCCCCGACTACCAGTCTTACTTCCACACCATCGAGGAGCTCCAACAGA
AGATCCTGTGCAGCAAGGCCGAGAATGCCAGGCTGATTGTACAAATTGACAATGCCAAGCTGGCTGCCGA
TGACTTTAGGATCAAGCTGGAGAGTGAGCGCTCCCTGCGCCAGCTGGTGGAGGCAGACAAGTGTGGGACA
CAGAAGCTCCTGGATGATGCGACCCTGGCCAAGGCCGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGG
AGCAGCTCTCCCTCAAGAGCAACCACGAGCAGGAAGTAAAGATTCTGAGGAGTCAGCTGGGGGAGAAGCT
CCGGATTGAGCTGGACATTGAGCCCACCATTGACCTGAACAGGGTGCTGGGGGAGATGCGGGCTCAGTAT
GAGGCCATGTTGGAGACCAACCGCCAGGATGTGGAACAGTGGTTCCAAGCCCAGTCTGAAGGCATCAGCC
TGCAGGACATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGATGCACGGT
GAATGCCCTGGAGGTGGAGCGCCAAGCCCAGCACACCTTGAAGGACTGTCTGCAGAACTCCCTGTGTGAA
GCCGAGGACCGCTTCGGCACGGAGCTGGCCCAGATGCAGAGCCTCATCAGCAACGTGGAGGAGCAGCTGT
CTGAGATCCGGGCCGACCTGGAGCGGCAAAACCAGGAGTACCAGGTGCTGCTGGACGTGAAGACCCGGCT
GGAGAATGAGATTGCCACGTACCGGAACCTTCTGGAAAGCGAGGACTGCAAACTCCCCTGCAATCCGTGC
TCCACGTCTCCCTCCTGCGTGACTGCCCCCTGTGCTCCTCGCCCAAGCTGTGGCCCCTGCACCACCTGTG
GGCCCACCTGTGGAGCCAGCACCACCGGAAGCCGATTCTGA

Translation (456 aa):
MTSSYSSSSCPLGCTMAPGARNVSVSPIDIGCQPGAEANIAPMCLLANVAHANRVRVGSTPLGRPSLCLP
PTCHTACPLPGTCHIPGNIGICGAYGENTLNGHEKETMQFLNDRLANYLEKVRQLEQENAELEATLLERS
KCHESTVCPDYQSYFHTIEELQQKILCSKAENARLIVQIDNAKLAADDFRIKLESERSLRQLVEADKCGT
QKLLDDATLAKADLEAQQESLKEEQLSLKSNHEQEVKILRSQLGEKLRIELDIEPTIDLNRVLGEMRAQY
EAMLETNRQDVEQWFQAQSEGISLQDMSCSEELQCCQSEILELRCTVNALEVERQAQHTLKDCLQNSLCE
AEDRFGTELAQMQSLISNVEEQLSEIRADLERQNQEYQVLLDVKTRLENEIATYRNLLESEDCKLPCNPC
STSPSCVTAPCAPRPSCGPCTTCGPTCGASTTGSRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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