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Report for CCDS3471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3471.1 Public Homo sapiens 4 GABRA2 24 110 108 CCDS HistoryNCBI Gene:2555Re-query CCDS DB by CCDS ID:3471.1Re-query CCDS DB by GeneID:2555See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3471.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356504.5 ENSP00000348897.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356504.5Link to Ensembl Protein Viewer:ENSP00000348897.1Re-query CCDS DB by Nucleotide ID:ENST00000356504Re-query CCDS DB by Protein ID:ENSP00000348897
Original member Current member EBI ENST00000381620.9 ENSP00000371033.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381620.9Link to Ensembl Protein Viewer:ENSP00000371033.4Re-query CCDS DB by Nucleotide ID:ENST00000381620Re-query CCDS DB by Protein ID:ENSP00000371033
Original member Current member EBI ENST00000514090.5 ENSP00000421300.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514090.5Link to Ensembl Protein Viewer:ENSP00000421300.1Re-query CCDS DB by Nucleotide ID:ENST00000514090Re-query CCDS DB by Protein ID:ENSP00000421300
Original member Current member EBI ENST00000510861.5 ENSP00000421828.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510861.5Link to Ensembl Protein Viewer:ENSP00000421828.1Re-query CCDS DB by Nucleotide ID:ENST00000510861Re-query CCDS DB by Protein ID:ENSP00000421828
Original member Current member NCBI NM_000807.4 NP_000798.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000807.4Link to Protein Sequence:NP_000798.2Re-query CCDS DB by Nucleotide ID:NM_000807Re-query CCDS DB by Protein ID:NP_000798Link to BLAST:NP_000798.2
Original member Current member NCBI NM_001114175.3 NP_001107647.1 Accepted alive Link to Nucleotide Sequence:NM_001114175.3Link to Protein Sequence:NP_001107647.1Re-query CCDS DB by Nucleotide ID:NM_001114175Re-query CCDS DB by Protein ID:NP_001107647Link to BLAST:NP_001107647.1
Original member Current member NCBI NM_001377146.1 NP_001364075.1 Accepted alive Link to Nucleotide Sequence:NM_001377146.1Link to Protein Sequence:NP_001364075.1Re-query CCDS DB by Nucleotide ID:NM_001377146Re-query CCDS DB by Protein ID:NP_001364075Link to BLAST:NP_001364075.1
Original member Current member NCBI NM_001377147.1 NP_001364076.1 Accepted alive Link to Nucleotide Sequence:NM_001377147.1Link to Protein Sequence:NP_001364076.1Re-query CCDS DB by Nucleotide ID:NM_001377147Re-query CCDS DB by Protein ID:NP_001364076Link to BLAST:NP_001364076.1
Original member Current member NCBI NM_001377148.1 NP_001364077.1 Accepted alive Link to Nucleotide Sequence:NM_001377148.1Link to Protein Sequence:NP_001364077.1Re-query CCDS DB by Nucleotide ID:NM_001377148Re-query CCDS DB by Protein ID:NP_001364077Link to BLAST:NP_001364077.1
Original member Current member NCBI NM_001377149.1 NP_001364078.1 Accepted alive Link to Nucleotide Sequence:NM_001377149.1Link to Protein Sequence:NP_001364078.1Re-query CCDS DB by Nucleotide ID:NM_001377149Re-query CCDS DB by Protein ID:NP_001364078Link to BLAST:NP_001364078.1
Original member Current member NCBI NM_001377150.1 NP_001364079.1 Accepted alive Link to Nucleotide Sequence:NM_001377150.1Link to Protein Sequence:NP_001364079.1Re-query CCDS DB by Nucleotide ID:NM_001377150Re-query CCDS DB by Protein ID:NP_001364079Link to BLAST:NP_001364079.1
Original member Current member NCBI NM_001377151.1 NP_001364080.1 Accepted alive Link to Nucleotide Sequence:NM_001377151.1Link to Protein Sequence:NP_001364080.1Re-query CCDS DB by Nucleotide ID:NM_001377151Re-query CCDS DB by Protein ID:NP_001364080Link to BLAST:NP_001364080.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000798.2 451 P47869-1 451 100% 0 0
NP_001107647.1 451 P47869-1 451 100% 0 0
NP_001364075.1 451 P47869-1 451 100% 0 0
NP_001364076.1 451 P47869-1 451 100% 0 0
NP_001364077.1 451 P47869-1 451 100% 0 0
NP_001364078.1 451 P47869-1 451 100% 0 0
NP_001364079.1 451 P47869-1 451 100% 0 0
NP_001364080.1 451 P47869-1 451 100% 0 0

Chromosomal Locations for CCDS 3471.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 46250308 46250604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46261926 46262128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46303460 46303612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46305568 46305711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46310173 46310255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46312496 46312716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46332615 46332682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46386074 46386189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46388636 46388706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGAAGACAAAATTGAACATCTACAACATGCAGTTCCTGCTTTTTGTTTTCTTGGTGTGGGACCCTGCCA
GGTTGGTGCTGGCTAACATCCAAGAAGATGAGGCTAAAAATAACATTACCATCTTTACGAGAATTCTTGA
CAGACTTCTGGATGGTTACGATAATCGGCTTAGACCAGGACTGGGAGACAGTATTACTGAAGTCTTCACT
AACATCTACGTGACCAGTTTTGGCCCTGTCTCAGATACAGATATGGAATATACAATTGATGTTTTCTTTC
GACAAAAATGGAAAGATGAACGTTTAAAATTTAAAGGTCCTATGAATATCCTTCGACTAAACAATTTAAT
GGCTAGCAAAATCTGGACTCCAGATACCTTTTTTCACAATGGGAAAAAATCAGTAGCTCATAATATGACA
ATGCCAAATAAGTTGCTTCGAATTCAGGATGATGGGACTCTGCTGTATACCATGAGGCTTACAGTTCAAG
CTGAATGCCCAATGCACTTGGAGGATTTCCCAATGGATGCTCATTCATGTCCTCTGAAATTTGGCAGCTA
TGCATATACAACTTCAGAGGTCACTTATATTTGGACTTACAATGCATCTGATTCAGTACAGGTTGCTCCT
GATGGCTCTAGGTTAAATCAATATGACCTGCTGGGCCAATCAATCGGAAAGGAGACAATTAAATCCAGTA
CAGGTGAATATACTGTAATGACAGCTCATTTCCACCTGAAAAGAAAAATTGGGTATTTTGTGATTCAAAC
CTATCTGCCTTGCATCATGACTGTCATTCTCTCCCAAGTTTCATTCTGGCTTAACAGAGAATCTGTGCCT
GCAAGAACTGTGTTTGGAGTAACAACTGTCCTAACAATGACAACTCTAAGCATCAGTGCTCGGAATTCTC
TCCCCAAAGTGGCTTATGCAACTGCCATGGACTGGTTTATTGCTGTTTGTTATGCATTTGTGTTCTCTGC
CCTAATTGAATTTGCAACTGTTAATTACTTCACCAAAAGAGGATGGGCTTGGGATGGGAAGAGTGTAGTA
AATGACAAGAAAAAAGAAAAGGCTTCCGTTATGATACAGAACAACGCTTATGCAGTGGCTGTTGCCAATT
ATGCCCCGAATCTTTCAAAAGATCCAGTTCTCTCCACCATCTCCAAGAGTGCAACCACGCCAGAACCCAA
CAAGAAGCCAGAAAACAAGCCAGCTGAAGCAAAGAAAACTTTCAACAGTGTTAGCAAAATTGACAGAATG
TCCAGAATAGTTTTTCCAGTTTTGTTTGGTACCTTTAATTTAGTTTACTGGGCTACATATTTAAACAGAG
AACCTGTATTAGGGGTCAGTCCTTGA

Translation (451 aa):
MKTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPGLGDSITEVFT
NIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASKIWTPDTFFHNGKKSVAHNMT
MPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYNASDSVQVAP
DGSRLNQYDLLGQSIGKETIKSSTGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVP
ARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVV
NDKKKEKASVMIQNNAYAVAVANYAPNLSKDPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDRM
SRIVFPVLFGTFNLVYWATYLNREPVLGVSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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