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Report for CCDS3372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3372.1 Public Homo sapiens 4 OTOP1 24 110 108 CCDS HistoryNCBI Gene:133060Re-query CCDS DB by CCDS ID:3372.1Re-query CCDS DB by GeneID:133060See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3372.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296358.5 ENSP00000296358.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296358.5Link to Ensembl Protein Viewer:ENSP00000296358.4Re-query CCDS DB by Nucleotide ID:ENST00000296358Re-query CCDS DB by Protein ID:ENSP00000296358
Original member Current member NCBI NM_177998.3 NP_819056.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_177998.3Link to Protein Sequence:NP_819056.1Re-query CCDS DB by Nucleotide ID:NM_177998Re-query CCDS DB by Protein ID:NP_819056Link to BLAST:NP_819056.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_819056.1 612 Q7RTM1 612 100% 0 0

Chromosomal Locations for CCDS 3372.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 4188803 4188973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4197166 4198103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4202448 4202578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4206072 4206130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4212868 4213004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4226462 4226864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGCTCGAGGGCCTGGGGTCGCCCGCCTCGCCCCGGGCAGCTGCAAGCGCCTCGGTCGCAGGGTCGTCGG
GGCCAGCGGCCTGCTCGCCTCCCTCGTCCTCGGCCCCGAGGTCCCCGGAATCCCCGGCCCCCCGGCGGGG
CGGTGTGCGCGCCAGCGTCCCACAGAAACTGGCCGAGATGCTGAGCAGCCAGTATGGGCTGATCGTGTTC
GTGGCGGGGCTGCTGCTGCTGCTGGCCTGGGCCGTGCACGCCGCGGGCGTGAGCAAGAGCGACCTGCTGT
GCTTCCTGACGGCGCTCATGCTGCTGCAGCTGCTGTGGATGCTGTGGTACGTGGGCCGCAGCTCCGCGCA
CCGCCGCCTCTTCCGCCTCAAGGACACGCACGCGGGTGCCGGCTGGCTGCGCGGTAGTATCACATTGTTT
GCAGTCATTACCGTCATCCTGGGATGCCTTAAAATTGGATACTTCATTGGATTTTCAGAATGTTTATCAG
CCACTGAAGGAGTTTTCCCAGTCACCCATTCAGTGCATACTTTGTTGCAGGTATATTTTCTTTGGGGGCA
TGCAAAGGATATTATCCAGTCTTTCAAAACACTGGAAAGGTTTGGAGTGATCCACTCGGTGTTCACCAAC
CTGCTTCTGTGGGCCAATGGCGTCCTCAATGAGTCAAAGCACCAACTCAATGAGCACAAGGAACGGCTCA
TCACTCTGGGTTTTGGGAACATAACAACAGTTTTAGATGACCACACACCGCAGTGTAACTGCACGCCCCC
AACTCTGTGCACTGCCATCTCCCACGGGATCTACTACCTCTACCCCTTCAACATAGAGTATCAGATCCTG
GCCTCCACAATGCTCTACGTCCTGTGGAAGAACATCGGGCGCAAAGTTGACAGCCATCAGCACCAGAAGA
TGCAGTTCAAGTCTGATGGGGTCATGGTGGGCGCAGTCCTGGGCCTGACCGTGCTGGCCGCCACCATTGC
TGTGGTGGTGGTATACCTGATTCATATTGGGCGCTCCAAGACCAAGAGCGAGTCGGCACTCATCATGTTC
TACCTGTATGCCATCACCCTGCTGATGCTTATGGGGGCTGCGGGGCTGGCTGGAATCCGGATTTACAGGA
TAGACGAGAAGTCACTGGATGAGTCCAAAAATCCGGCCCGCAAACTGGACTCGGACCTCTTGGTGGGCAC
TGCCTCGGGCTCCTGGCTTATCTCCTGGGGCTCAATCTTGGCCATCCTCTGTGCTGAGGGCCACCCCCGC
TACACCTGGTACAACCTGCCCTACTCCATCCTGGCGATCGTGGAGAAGTACATCCAGAACCTCTTCATCT
TTGAATCCATTCACCGAGAGCCTGAAAAACTCTCTGAGGACATCCAAACCCTTCGGGTGGTCACAGTCTG
CAATGGCAACACCATGCCCCTTGCTTCTTCCTGCCCCAAGAGTGGAGGTGTGGCCAGAGATGTGGCTCCC
CAGGGCAAGGACATGCCACCAGCAGCCAATGGAAATGTGTGCATGAGAGAAAGCCATGACAAGGAGGAGG
AGAAGCAGGAGGAGAGCAGCTGGGGAGGGAGCCCAAGCCCAGTCCGCCTTCCCCGTTTCTTACAGGGCAA
CGCCAAGAGAAAAGTCCTGAGGAATATTGCAGCCTTCTTGTTCCTCTGCAATATTTCGCTTTGGATACCT
CCCGCCTTTGGCTGTCGACCTGAGTATGACAATGGATTGGAGGAGATTGTCTTTGGCTTTGAACCCTGGA
TAATTGTGGTCAACCTGGCCATGCCTTTTTCTATTTTCTATCGAATGCACGCAGCTGCCTCCCTCTTTGA
GGTCTATTGTAAGATATAG

Translation (612 aa):
MLEGLGSPASPRAAASASVAGSSGPAACSPPSSSAPRSPESPAPRRGGVRASVPQKLAEMLSSQYGLIVF
VAGLLLLLAWAVHAAGVSKSDLLCFLTALMLLQLLWMLWYVGRSSAHRRLFRLKDTHAGAGWLRGSITLF
AVITVILGCLKIGYFIGFSECLSATEGVFPVTHSVHTLLQVYFLWGHAKDIIQSFKTLERFGVIHSVFTN
LLLWANGVLNESKHQLNEHKERLITLGFGNITTVLDDHTPQCNCTPPTLCTAISHGIYYLYPFNIEYQIL
ASTMLYVLWKNIGRKVDSHQHQKMQFKSDGVMVGAVLGLTVLAATIAVVVVYLIHIGRSKTKSESALIMF
YLYAITLLMLMGAAGLAGIRIYRIDEKSLDESKNPARKLDSDLLVGTASGSWLISWGSILAILCAEGHPR
YTWYNLPYSILAIVEKYIQNLFIFESIHREPEKLSEDIQTLRVVTVCNGNTMPLASSCPKSGGVARDVAP
QGKDMPPAANGNVCMRESHDKEEEKQEESSWGGSPSPVRLPRFLQGNAKRKVLRNIAAFLFLCNISLWIP
PAFGCRPEYDNGLEEIVFGFEPWIIVVNLAMPFSIFYRMHAAASLFEVYCKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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