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Report for CCDS26727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26727.1 Public Mus musculus 13 Naip5 23 108 98 CCDS HistoryNCBI Gene:17951Re-query CCDS DB by CCDS ID:26727.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26727.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049789.2 ENSMUSP00000058611.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049789.2Link to Ensembl Protein Viewer:ENSMUSP00000058611.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000049789Re-query CCDS DB by Protein ID:ENSMUSP00000058611
Original member NCBI NM_010870.2 NP_035000.2 Updated not alive Link to Nucleotide Sequence:NM_010870.2Link to Protein Sequence:NP_035000.2Re-query CCDS DB by Nucleotide ID:NM_010870Re-query CCDS DB by Protein ID:NP_035000
Current member NCBI NM_010870.3 NP_035000.2 Accepted alive Link to Nucleotide Sequence:NM_010870.3Link to Protein Sequence:NP_035000.2Re-query CCDS DB by Nucleotide ID:NM_010870Re-query CCDS DB by Protein ID:NP_035000Link to BLAST:NP_035000.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035000.2 1403 Q9R016 1403 100% 0 0

Chromosomal Locations for CCDS 26727.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 100212607 100212971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100214652 100214816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100217068 100217154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100217459 100217611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100219664 100219831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100221453 100223564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100227629 100227686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100228479 100228560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100229583 100229682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100230665 100230784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100233340 100233391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100242781 100242862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100245092 100245191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100245632 100246199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4212 nt):
ATGGCTGAGCATGGGGAGTCCTCCGAGGATCGGATTTCTGAGATTGATTATGAATTTCTCCCCGAGCTCT
CTGCTCTTCTCGGGGTGGATGCATTTCAGGTGGCAAAGAGCCAAGAAGAAGAAGAGCATAAAGAACGGAT
GAAAATGAAGAAAGGTTTTAACTCACAGATGCGCAGTGAAGCCAAACGACTAAAGACCTTTGAGACCTAT
GACACGTTCAGATCATGGACGCCACAGGAGATGGCAGCTGCTGGGTTTTACCACACAGGGGTGAGACTTG
GCGTTCAGTGCTTTTGCTGTAGCTTGATCCTCTTTGGTAACAGCCTCAGGAAGCTTCCCATAGAGAGACA
CAAGAAATTACGTCCGGAATGTGAGTTCCTTCAGGGCAAAGATGTTGGTAACATTGGCAAGTATGACATC
CGGGTGAAGAGGCCAGAGAAGATGCTGAGAGGTGGCAAAGCCAGGTACCATGAAGAGGAGGCCAGACTGG
AGTCCTTTGAGGACTGGCCATTTTATGCCCATGGGACATCACCACGTGTACTCTCAGCAGCTGGCTTTGT
CTTTACAGGTAAAAGGGACACTGTGCAGTGTTTCTCCTGTGGCGGAAGCTTGGGCAACTGGGAAGAAGGA
GATGACCCCTGGAAGGAGCATGCCAAGTGGTTCCCCAAATGTGAATTTCTTCAAAGTAAGAAATCCTCAG
AGGAAATTGCCCAGTATATTCAAAGCTACGAGGGATTTGTTCATGTAACGGGAGAACATTTTGTGAAGTC
CTGGGTCAGAAGAGAATTACCTATGGTATCAGCTTACTGCAATGACAGTGTCTTCGCTAATGAAGAACTA
AGGATGGACATGTTTAAGGACTGGCCCCAAGAATCACCTGTGGGTGTTGAAGCTCTAGTCAGAGCAGGCT
TTTTCTACACTGGCAAAAAGGACATTGTCCGGTGTTTTTCCTGTGGAGGATGTTTGGAAAAGTGGGCAGA
AGGTGACGACCCAATGGAAGATCACATCAAGTTTTTTCCCGAATGTGTATTTCTTCAAACCTTGAAGTCC
TCTGCAGAAGTAATTCCAACCCTTCAGAGCCAATATGCACTTCCAGAAGCCACGGAAACCACACGTGAAA
GCAACCATGGTGATGCAGCAGCAGTTCATTCTACAGTGGTGGACTTGGGTAGGAGTGAAGCCCAGTGGTT
TCAAGAGGCCAGGAGTCTGAGTGAGCAGCTAAGAGACAACTACACTAAAGCCACTTTCCGCCACATGAAC
TTGCCAGAAGTGTGCTCCAGCCTTGGCACTGACCACTTGCTCAGCTGCGATGTGTCCATCATTTCAAAGC
ACATCAGCCAGCCTGTGCAAGAGGCCCTGACGATCCCCGAGGTCTTCTCCAATCTCAACTCTGTCATGTG
TGTGGAGGGGGAAACTGGCAGTGGAAAGACAACCTTCCTGAAGAGGATAGCTTTTCTCTGGGCATCAGGA
TGCTGCCCCCTGTTGTACAGGTTCCAGCTGGTCTTCTATCTCTCCCTTAGTTCCATCACACCAGATCAGG
GACTGGCCAACATCATCTGTGCCCAACTCCTAGGGGCAGGAGGTTGCATTAGTGAAGTGTGTCTGAGCAG
CAGCATCCAGCAGTTACAACACCAGGTGCTGTTCCTGTTGGATGACTACAGTGGGCTGGCCTCACTCCCC
CAAGCCCTACACACACTGATTACAAAAAACTACTTGTCACGGACCTGCTTATTGATCGCTGTGCATACAA
ACAGGGTCAGAGACATCCGCCTATACCTAGGTACAAGTCTAGAGATCCAAGAGTTTCCCTTCTATAATAC
TGTCTCTGTATTACGGAAGTTTTTTTCACATGACATAATCTGTGTGGAAAAGCTTATAATTTACTTTATT
GATAATAAAGATTTACAGGGAGTTTACAAGACCCCTCTCTTTGTAGCAGCAGTATGTACTGACTGGATTC
AAAATGCATCTGCCCAGGATAAATTTCAAGATGTGACACTTTTCCAGTCCTACATGCAATACCTGTCCTT
AAAATACAAAGCTACAGCTGAGCCTCTCCAGGCCACTGTGTCCTCATGTGGGCAGCTGGCCTTGACAGGG
CTTTTCTCATCATGCTTTGAGTTCAATAGTGATGACCTGGCAGAGGCAGGAGTTGATGAAGATGAAAAGC
TTACCACCCTCTTGATGAGCAAATTCACCGCCCAGAGACTGAGACCAGTCTACCGGTTTTTAGGTCCTCT
GTTCCAGGAGTTTCTTGCTGCCGTGAGGTTGACTGAACTCCTGAGTTCAGATAGGCAGGAAGACCAAGAT
CTTGGACTTTATTATTTGAGACAAATCGACTCACCTCTGAAGGCAATAAACTCCTTTAACATATTTTTGT
ATTATGTCTCCAGCCACTCTTCCTCAAAGGCAGCGCCAACAGTTGTATCTCATTTGCTTCAGTTGGTGGA
TGAGAAAGAGTCACTGGAGAACATGTCTGAAAATGAGGATTACATGAAGCTCCATCCACAAACTTTTCTA
TGGTTTCAGTTTGTTAGAGGGTTGTGGCTGGTGTCTCCTGAATCTTCCTCTTCATTCGTTTCAGAACATT
TATTGCGCCTTGCTCTAATCTTTGCTTATGAAAGCAACACAGTTGCTGAATGCTCTCCATTTATTTTGCA
ATTCCTTCGAGGAAAAACACTGGCTTTAAGAGTACTGAATTTACAGTACTTTAGGGACCACCCAGAAAGC
CTGTTACTGTTGAGGAGCTTAAAGGTTTCCATAAATGGAAATAAAATGTCATCTTATGTAGATTATTCAT
TCAAGACATATTTTGAAAACTTACAGCCACCAGCTATAGATGAGGAGTATACATCTGCCTTTGAGCATAT
AAGTGAATGGAGGAGAAATTTTGCTCAAGATGAGGAGATCATAAAAAACTATGAAAATATCCGACCCAGA
GCCCTACCAGACATCAGTGAAGGGTACTGGAAACTGTCCCCCAAGCCATGCAAGATCCCCAAGCTGGAAG
TTCAAGTGAACAACACGGATGCAGCAGATCAAGCACTGCTCCAGGTCCTCATGGAAGTCTTCTCAGCTTC
ACAGAGTATTGAGTTCCGTTTATTCAACAGCAGTGGCTTCCTTGAAAGCATCTGCCCAGCTCTGGAGCTG
AGTAAGGCCTCTGTCACCAAGTGTTCCATGTCCAGGCTGGAGCTCAGCAGAGCAGAACAGGAGCTGCTTC
TCACCCTGCCTGCCCTGCAGTCTCTCGAGGTCTCAGAGACAAACCAGTTACCAGAACAGCTCTTCCATAA
CTTGCACAAGTTCCTGGGCCTGAAAGAACTGTGTGTGAGACTAGATGGCAAACCGAATGTGCTCTCAGTC
CTTCCTAGAGAGTTCCCAAACCTCCTTCACATGGAGAAGTTATCCATCCAAACCTCCACGGAGTCTGACC
TCTCCAAACTAGTTAAATTCATCCAGAACTTTCCAAATCTCCATGTTTTCCATCTGAAATGTGATTTCCT
TTCAAATTGTGAGTCTCTCATGGCTGTGCTTGCTTCCTGCAAGAAACTCAGAGAGATTGAGTTTTCTGGA
CGATGCTTTGAAGCCATGACCTTTGTCAACATTTTGCCAAATTTTGTTTCTCTGAAGATACTGAATCTTA
AAGATCAACAATTTCCAGATAAGGAAACGTCAGAAAAGTTTGCCCAGGCTCTGGGTTCTCTCAGGAACCT
GGAGGAACTGCTCGTTCCCACTGGGGACGGGATTCACCAAGTGGCCAAACTGATTGTCCGGCAGTGTCTG
CAGCTTCCGTGCCTCCGAGTTCTCACCTTTCACGACATCTTGGACGATGACAGTGTGATTGAAATTGCCA
GGGCGGCAACCAGTGGAGGTTTCCAGAAACTTGAGAACTTAGATATTTCCATGAATCACAAGATTACCGA
GGAAGGATATAGAAATTTCTTTCAAGCCCTGGACAACTTGCCAAACCTACAAGAGCTGAACATCTGCAGG
AATATCCCAGGACGCATTCAAGTTCAGGCCACCACTGTCAAGGCTCTGGGTCAATGTGTGTCCCGACTGC
CCAGCCTCATCAGACTGCACATGCTCAGTTGGCTCCTGGATGAAGAGGACATGAAAGTGATTAATGATGT
GAAGGAAAGACATCCCCAGTCTAAACGCTTGATTATCTTCTGGAAATTGATAGTCCCATTCTCTCCTGTT
ATCCTGGAGTAA

Translation (1403 aa):
MAEHGESSEDRISEIDYEFLPELSALLGVDAFQVAKSQEEEEHKERMKMKKGFNSQMRSEAKRLKTFETY
DTFRSWTPQEMAAAGFYHTGVRLGVQCFCCSLILFGNSLRKLPIERHKKLRPECEFLQGKDVGNIGKYDI
RVKRPEKMLRGGKARYHEEEARLESFEDWPFYAHGTSPRVLSAAGFVFTGKRDTVQCFSCGGSLGNWEEG
DDPWKEHAKWFPKCEFLQSKKSSEEIAQYIQSYEGFVHVTGEHFVKSWVRRELPMVSAYCNDSVFANEEL
RMDMFKDWPQESPVGVEALVRAGFFYTGKKDIVRCFSCGGCLEKWAEGDDPMEDHIKFFPECVFLQTLKS
SAEVIPTLQSQYALPEATETTRESNHGDAAAVHSTVVDLGRSEAQWFQEARSLSEQLRDNYTKATFRHMN
LPEVCSSLGTDHLLSCDVSIISKHISQPVQEALTIPEVFSNLNSVMCVEGETGSGKTTFLKRIAFLWASG
CCPLLYRFQLVFYLSLSSITPDQGLANIICAQLLGAGGCISEVCLSSSIQQLQHQVLFLLDDYSGLASLP
QALHTLITKNYLSRTCLLIAVHTNRVRDIRLYLGTSLEIQEFPFYNTVSVLRKFFSHDIICVEKLIIYFI
DNKDLQGVYKTPLFVAAVCTDWIQNASAQDKFQDVTLFQSYMQYLSLKYKATAEPLQATVSSCGQLALTG
LFSSCFEFNSDDLAEAGVDEDEKLTTLLMSKFTAQRLRPVYRFLGPLFQEFLAAVRLTELLSSDRQEDQD
LGLYYLRQIDSPLKAINSFNIFLYYVSSHSSSKAAPTVVSHLLQLVDEKESLENMSENEDYMKLHPQTFL
WFQFVRGLWLVSPESSSSFVSEHLLRLALIFAYESNTVAECSPFILQFLRGKTLALRVLNLQYFRDHPES
LLLLRSLKVSINGNKMSSYVDYSFKTYFENLQPPAIDEEYTSAFEHISEWRRNFAQDEEIIKNYENIRPR
ALPDISEGYWKLSPKPCKIPKLEVQVNNTDAADQALLQVLMEVFSASQSIEFRLFNSSGFLESICPALEL
SKASVTKCSMSRLELSRAEQELLLTLPALQSLEVSETNQLPEQLFHNLHKFLGLKELCVRLDGKPNVLSV
LPREFPNLLHMEKLSIQTSTESDLSKLVKFIQNFPNLHVFHLKCDFLSNCESLMAVLASCKKLREIEFSG
RCFEAMTFVNILPNFVSLKILNLKDQQFPDKETSEKFAQALGSLRNLEELLVPTGDGIHQVAKLIVRQCL
QLPCLRVLTFHDILDDDSVIEIARAATSGGFQKLENLDISMNHKITEEGYRNFFQALDNLPNLQELNICR
NIPGRIQVQATTVKALGQCVSRLPSLIRLHMLSWLLDEEDMKVINDVKERHPQSKRLIIFWKLIVPFSPV
ILE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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