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Report for CCDS47357.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
47357.2 |
Public |
Homo sapiens |
5 |
ZFP62 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:643836](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:47357.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:643836](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 5 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 47357.1 |
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data, and by the reference genome allele (GRCh37 assembly). It should be noted that the updated start codon is polymorphic, where some transcripts contain ATC versus ATG in the reference genome allele. This corresponds to the reference SNP rs705441. The previously represented downstream start codon is likely to be used in transcripts derived from the ATC allele, resulting in a protein that is 27 aa shorter at the N-terminus. |
Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 47357.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000512132.5 |
ENSP00000426193.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000512132.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000426193.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000512132](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000426193](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001377939.1 |
NP_001364868.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001377939.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001364868.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001377939](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001364868](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001364868.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001377940.1 |
NP_001364869.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001377940.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001364869.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001377940](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001364869](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001364869.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001377941.1 |
NP_001364870.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001377941.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001364870.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001377941](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001364870](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001364870.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001377942.1 |
NP_001364871.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001377942.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001364871.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001377942](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001364871](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001364871.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_152283.5 |
NP_689496.4 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_152283.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_689496.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_152283](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_689496](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_689496.4](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 47357.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2604 nt): ATGCCTGAATCTAAGGTTGGTGACACATGTGTTTGGGATAGCAAGGTAGAGAATCAACAGAAAAAGCCTG TGGAAAACAGGATGAAGGAGGACAAAAGCAGCATCAGGGAAGCAATCAGCAAAGCCAAGAGTACAGCAAA TATAAAGACAGAACAGGAAGGTGAGGCATCTGAGAAGAGCTTGCATCTGAGCCCACAGCATATCACACAC CAGACTATGCCTATAGGACAGAGAGGCAGTGAGCAAGGCAAACGTGTGGAGAACATTAATGGAACCTCCT ACCCTAGTCTACAGCAGAAAACCAATGCTGTTAAGAAATTACATAAATGTGATGAATGTGGGAAATCCTT CAAATATAATTCCCGCCTTGTTCAACATAAAATTATGCACACTGGGGAAAAGCGCTATGAATGTGATGAC TGTGGAGGGACTTTCCGGAGCAGCTCGAGCCTTCGGGTCCACAAACGGATCCACACTGGGGAGAAGCCGT ACAAGTGTGAGGAATGTGGGAAAGCCTACATGTCCTACTCCAGCCTTATAAACCACAAAAGCACCCATTC TGGGGAGAAGAACTGTAAATGTGATGAATGTGGAAAATCCTTCAATTATAGCTCTGTTCTGGACCAGCAT AAAAGGATCCACACTGGGGAGAAGCCCTATGAATGTGGTGAGTGTGGGAAGGCCTTCAGGAACAGCTCTG GGCTCAGAGTCCACAAAAGGATCCACACGGGGGAGAAGCCCTATGAATGCGACATCTGTGGGAAAACCTT CAGTAACAGCTCTGGCCTTAGGGTCCATAAAAGGATCCACACAGGTGAGAAACCTTACGAATGTGATGAG TGTGGGAAGGCCTTCATTACTTGTAGAACACTTCTCAACCATAAAAGCATCCACTTTGGAGATAAACCCT ATAAATGTGATGAGTGTGAGAAATCTTTTAATTATAGCTCTCTTCTCATTCAGCATAAAGTCATCCACAC TGGAGAGAAACCTTATGAATGTGATGAATGTGGGAAGGCTTTCAGGAACAGCTCAGGCCTCATAGTGCAT AAAAGGATCCACACAGGAGAGAAACCTTACAAGTGTGATGTCTGTGGCAAAGCATTCAGCTATAGCTCAG GCCTCGCAGTCCATAAAAGCATTCACCCTGGGAAGAAAGCCCATGAATGTAAGGAGTGTGGGAAATCCTT TAGTTATAACTCACTACTTCTTCAACACAGAACTATTCATACCGGAGAGAGACCTTATGTATGTGATGTG TGTGGGAAAACGTTCAGAAACAATGCAGGCCTCAAAGTCCACAGGAGGCTCCATACTGGGGAAAAACCAT ATAAGTGTGATGTGTGTGGGAAAGCCTATATCTCACGCTCTAGCCTTAAAAATCACAAAGGAATCCACCT TGGGGAGAAGCCCTATAAATGTAGCTATTGTGAGAAATCCTTCAACTACAGCTCTGCCCTTGAACAGCAT AAAAGGATTCATACCAGGGAAAAACCCTTTGGGTGTGATGAGTGTGGTAAAGCTTTCAGAAATAATTCTG GCCTTAAAGTACATAAACGAATCCACACTGGGGAACGACCTTACAAATGTGAAGAATGTGGGAAAGCATA CATCTCTCTCTCGAGCCTTATAAATCATAAAAGTGTACACCCTGGGGAGAAGCCCTTTAAGTGTGACGAG TGTGAGAAGGCCTTCATCACATACCGAACCCTTACAAACCACAAAAAAGTTCATCTTGGGGAGAAGCCCT ACAAATGTGATGTGTGTGAGAAATCTTTTAATTACACATCGCTCCTTTCTCAGCACAGAAGGGTCCACAC TAGAGAGAAACCCTATGAATGTGACAGGTGTGAGAAGGTCTTCAGAAACAACTCAAGCCTTAAAGTTCAT AAAAGAATCCATACTGGGGAGAGGCCCTATGAATGTGATGTGTGTGGAAAAGCCTACATCTCACACTCAA GCCTTATTAACCATAAGAGTACCCACCCTGGCAGGACACCCCATACATGTGATGAATGTGGAAAAGCTTT TTTCTCAAGCAGAACTCTTATAAGCCATAAAAGAGTCCATCTTGGGGAGAAACCCTTCAAGTGTGTTGAG TGTGGGAAATCTTTCAGTTACAGCTCTCTCCTTTCTCAGCACAAGAGGATCCACACAGGGGAGAAACCCT ATGTGTGTGATAGGTGTGGGAAGGCCTTCAGGAACAGCTCAGGCCTCACAGTGCATAAAAGGATCCACAC AGGTGAGAAACCCTATGAATGTGATGAGTGTGGGAAGGCATACATCTCACACTCAAGTCTTATCAATCAT AAAAGTGTCCACCAGGGGAAGCAGCCCTATAATTGTGAGTGTGGGAAATCCTTCAATTATAGATCAGTCC TTGACCAGCACAAAAGGATCCACACTGGAAAGAAGCCATACCGATGTAATGAGTGTGGTAAGGCTTTTAA TATCAGATCAAATCTCACCAAGCATAAAAGAACCCATACTGGAGAGGAATCTTTAAATGTGATATATGTG GGAAGTTATAGTGGCACATCCCAGAAGAGAACCTATGAGGGAGGGAATGCCCTGGATGGGGGCAGGATGA GGATGCCTCTGTAG
Translation (867 aa): MPESKVGDTCVWDSKVENQQKKPVENRMKEDKSSIREAISKAKSTANIKTEQEGEASEKSLHLSPQHITH QTMPIGQRGSEQGKRVENINGTSYPSLQQKTNAVKKLHKCDECGKSFKYNSRLVQHKIMHTGEKRYECDD CGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSSVLDQH KRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDE CGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVH KRIHTGEKPYKCDVCGKAFSYSSGLAVHKSIHPGKKAHECKECGKSFSYNSLLLQHRTIHTGERPYVCDV CGKTFRNNAGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQH KRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINHKSVHPGEKPFKCDE CEKAFITYRTLTNHKKVHLGEKPYKCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCEKVFRNNSSLKVH KRIHTGERPYECDVCGKAYISHSSLINHKSTHPGRTPHTCDECGKAFFSSRTLISHKRVHLGEKPFKCVE CGKSFSYSSLLSQHKRIHTGEKPYVCDRCGKAFRNSSGLTVHKRIHTGEKPYECDECGKAYISHSSLINH KSVHQGKQPYNCECGKSFNYRSVLDQHKRIHTGKKPYRCNECGKAFNIRSNLTKHKRTHTGEESLNVIYV GSYSGTSQKRTYEGGNALDGGRMRMPL
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