NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS44619.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44619.1 Public Homo sapiens 11 CPSF7 24 110 108 CCDS HistoryNCBI Gene:79869Re-query CCDS DB by CCDS ID:44619.1Re-query CCDS DB by GeneID:79869See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44619.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394888.8 ENSP00000378352.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394888.8Link to Ensembl Protein Viewer:ENSP00000378352.4Re-query CCDS DB by Nucleotide ID:ENST00000394888Re-query CCDS DB by Protein ID:ENSP00000378352
Original member Current member NCBI NM_001136040.4 NP_001129512.1 Accepted alive Link to Nucleotide Sequence:NM_001136040.4Link to Protein Sequence:NP_001129512.1Re-query CCDS DB by Nucleotide ID:NM_001136040Re-query CCDS DB by Protein ID:NP_001129512Link to BLAST:NP_001129512.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129512.1 471 Q8N684-1 471 100% 0 0

Chromosomal Locations for CCDS 44619.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61410943 61411105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61411769 61411937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61415666 61415784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61416105 61416519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61419922 61420094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61420470 61420573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61421390 61421608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61429182 61429235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGTCAGAAGGAGTGGACTTGATTGATATATATGCTGACGAGGAGTTCAACCAGGACCCAGAGTTCAACA
ATACAGATCAGATTGACCTGTATGATGATGTGCTGACAGCCACCTCACAGCCCTCAGATGACAGAAGCAG
CAGCACTGAACCACCTCCTCCTGTTCGCCAGGAGCCATCTCCCAAGCCCAACAACAAGACCCCTGCAATT
CTGTATACCTACAGTGGCCTGCGTAATAGACGAGCTGCCGTTTATGTGGGCAGCTTCTCCTGGTGGACCA
CAGACCAGCAGCTGATCCAGGTTATTCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGA
GAATCGAGCAAATGGCCAGTCCAAAGGGTATGCTGAGGTGGTGGTAGCCTCTGAAAACTCTGTCCACAAA
TTGTTGGAACTCCTACCAGGGAAAGTTCTTAATGGAGAAAAAGTGGACGTGAGGCCGGCCACCCGGCAGA
ACCTGTCACAGTTTGAGGCACAGGCTCGGAAACGTGAGTGTGTCCGAGTCCCAAGAGGGGGAATACCTCC
ACGGGCCCATTCCCGAGATTCTAGTGATTCTGCTGATGGACGGGCCACACCCTCTGAGAACCTTGTACCC
TCATCTGCTCGTGTGGATAAGCCCCCCAGTGTGCTGCCCTACTTCAATCGTCCTCCTTCGGCCCTTCCCC
TGATGGGTCTGCCCCCACCACCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGGGTCCCTCCTCC
TCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCACCTCCTCGATTACCTCCTCATCTTGCTGTACCT
CCCCCTGGGGCCATCCCACCTGCCCTTCACCTCAATCCAGCCTTCTTCCCCCCACCAAACGCTACAGTGG
GGCCTCCACCAGATACTTACATGAAGGCCTCTGCCCCCTATAACCACCATGGCAGCCGAGATTCGGGCCC
TCCACCCTCTACAGTGAGTGAAGCCGAATTTGAAGATATCATGAAGCGAAACAGAGCAATTTCCAGCAGT
GCCATTTCCAAAGCAGTATCTGGAGCCAGTGCAGGGGATTACAGTGACGCAATTGAGACGCTGCTCACAG
CCATTGCGGTTATCAAACAGTCCCGGGTTGCCAATGATGAGCGTTGCCGTGTCCTCATCTCCTCTCTTAA
GGACTGTCTTCATGGCATCGAAGCCAAGTCCTACAGTGTGGGTGCCAGTGGGAGCTCTTCCAGGAAAAGA
CATCGCTCCCGGGAAAGGTCACCTAGCCGGTCCCGGGAGAGCAGCAGGAGGCACCGGGATCTGCTTCATA
ATGAAGATCGGCATGATGATTATTTCCAAGAAAGGAACCGGGAGCATGAGAGACACCGGGATAGAGAACG
GGACCGGCACCACTGA

Translation (471 aa):
MSEGVDLIDIYADEEFNQDPEFNNTDQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQEPSPKPNNKTPAI
LYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHK
LLELLPGKVLNGEKVDVRPATRQNLSQFEAQARKRECVRVPRGGIPPRAHSRDSSDSADGRATPSENLVP
SSARVDKPPSVLPYFNRPPSALPLMGLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPPRLPPHLAVP
PPGAIPPALHLNPAFFPPPNATVGPPPDTYMKASAPYNHHGSRDSGPPPSTVSEAEFEDIMKRNRAISSS
AISKAVSGASAGDYSDAIETLLTAIAVIKQSRVANDERCRVLISSLKDCLHGIEAKSYSVGASGSSSRKR
HRSRERSPSRSRESSRRHRDLLHNEDRHDDYFQERNREHERHRDRERDRHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH