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Report for CCDS13388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13388.1 Public Homo sapiens 20 PCIF1 24 110 108 CCDS HistoryNCBI Gene:63935Re-query CCDS DB by CCDS ID:13388.1Re-query CCDS DB by GeneID:63935See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13388.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372409.8 ENSP00000361486.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372409.8Link to Ensembl Protein Viewer:ENSP00000361486.3Re-query CCDS DB by Nucleotide ID:ENST00000372409Re-query CCDS DB by Protein ID:ENSP00000361486
Original member Current member NCBI NM_022104.4 NP_071387.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022104.4Link to Protein Sequence:NP_071387.1Re-query CCDS DB by Nucleotide ID:NM_022104Re-query CCDS DB by Protein ID:NP_071387Link to BLAST:NP_071387.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071387.1 704 Q9H4Z3 704 100% 0 0

Chromosomal Locations for CCDS 13388.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 45939000 45939123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45939215 45939339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45940475 45940612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45940809 45940939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45941053 45941207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45943097 45943244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45943340 45943423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45943666 45943765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45944868 45945030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45945711 45945883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45946029 45946115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45946200 45946384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45947073 45947166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45947263 45947438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45947524 45947755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2115 nt):
ATGGCCAATGAGAATCACGGCAGCCCCCGGGAGGAAGCGTCCCTGCTGAGTCACTCCCCAGGTACCTCCA
ATCAGAGCCAGCCCTGTTCTCCAAAGCCAATCCGCCTGGTTCAGGACCTCCCAGAGGAGCTGGTGCATGC
AGGCTGGGAGAAGTGCTGGAGCCGGAGGGAGAATCGTCCCTACTACTTCAACCGATTCACCAACCAGTCC
CTGTGGGAGATGCCCGTGCTGGGGCAGCACGATGTGATTTCGGACCCTTTGGGGCTGAATGCGACCCCAC
TGCCCCAAGACTCAAGCTTGGTGGAAACTCCCCCGGCTGAGAACAAGCCCAGAAAGCGGCAGCTCTCGGA
AGAGCAGCCAAGCGGCAATGGTGTGAAGAAGCCCAAGATTGAAATCCCAGTGACACCCACAGGCCAGTCG
GTGCCCAGCTCCCCCAGTATCCCAGGAACCCCAACGCTGAAGATGTGGGGTACGTCCCCTGAAGATAAAC
AGCAGGCAGCTCTCCTACGACCCACTGAGGTCTACTGGGACCTGGACATCCAGACCAATGCTGTCATCAA
GCACCGGGGGCCTTCAGAGGTGCTGCCCCCGCATCCCGAAGTGGAACTGCTCCGCTCTCAGCTCATCCTG
AAGCTTCGGCAGCACTATCGGGAGCTGTGCCAGCAGCGAGAGGGCATTGAGCCTCCACGGGAGTCTTTCA
ACCGCTGGATGCTGGAGCGCAAGGTGGTAGACAAAGGATCTGACCCCCTGTTGCCCAGCAACTGTGAACC
AGTCGTGTCACCTTCCATGTTTCGTGAAATCATGAACGACATTCCTATCAGGTTATCCCGAATCAAGTTC
CGGGAGGAAGCCAAGCGCCTGCTCTTTAAATATGCGGAGGCCGCCAGGCGGCTCATCGAGTCCAGGAGTG
CATCCCCTGACAGTAGGAAGGTGGTCAAATGGAATGTGGAAGACACCTTTAGCTGGCTTCGGAAGGACCA
CTCAGCCTCCAAGGAGGACTACATGGATCGCCTGGAGCATCTGCGGAGGCAGTGTGGCCCCCACGTCTCG
GCCGCAGCCAAGGACTCCGTGGAAGGCATCTGCAGTAAGATCTACCACATCTCCCTGGAGTACGTCAAAC
GGATCCGAGAGAAGCACCTTGCCATCCTCAAGGAAAACAACATCTCAGAGGAGGTGGAGGCCCCTGAGGT
GGAGCCCCGCCTAGTGTACTGCTACCCAGTCCGGCTGGCTGTGTCTGCACCGCCCATGCCCAGCGTGGAG
ATGCACATGGAGAACAACGTGGTCTGCATCCGGTATAAGGGAGAGATGGTCAAGGTCAGCCGCAACTACT
TCAGCAAGCTGTGGCTCCTTTACCGCTACAGCTGCATTGATGACTCTGCCTTTGAGAGGTTCCTGCCCCG
GGTCTGGTGTCTTCTCCGACGGTACCAGATGATGTTCGGCGTGGGCCTCTACGAGGGGACTGGCCTGCAG
GGATCGCTGCCTGTGCATGTCTTTGAGGCCCTCCACCGACTCTTTGGCGTCAGCTTCGAGTGCTTCGCCT
CACCCCTCAACTGCTACTTCCGCCAGTACTGTTCTGCCTTCCCCGACACAGACGGCTACTTTGGCTCCCG
CGGGCCCTGCCTAGACTTTGCTCCACTGAGTGGTTCATTTGAGGCCAACCCTCCCTTCTGCGAGGAGCTC
ATGGATGCCATGGTCTCTCACTTTGAGAGACTGCTTGAGAGCTCACCGGAGCCCCTGTCCTTCATCGTGT
TCATCCCTGAGTGGCGGGAACCCCCAACACCAGCGCTCACCCGCATGGAGCAGAGCCGCTTCAAACGCCA
CCAGTTGATCCTGCCTGCCTTTGAGCATGAGTACCGCAGTGGCTCCCAGCACATCTGCAAGAAGGAGGAA
ATGCACTACAAGGCCGTCCACAACACGGCTGTGCTCTTCCTACAGAACGACCCTGGCTTTGCCAAGTGGG
CGCCGACGCCTGAACGGCTGCAGGAGCTGAGTGCTGCCTACCGGCAGTCAGGCCGCAGCCACAGCTCTGG
TTCTTCCTCATCGTCCTCCTCGGAGGCCAAGGACCGGGACTCGGGCCGTGAGCAGGGTCCTAGCCGCGAG
CCTCACCCCACTTAA

Translation (704 aa):
MANENHGSPREEASLLSHSPGTSNQSQPCSPKPIRLVQDLPEELVHAGWEKCWSRRENRPYYFNRFTNQS
LWEMPVLGQHDVISDPLGLNATPLPQDSSLVETPPAENKPRKRQLSEEQPSGNGVKKPKIEIPVTPTGQS
VPSSPSIPGTPTLKMWGTSPEDKQQAALLRPTEVYWDLDIQTNAVIKHRGPSEVLPPHPEVELLRSQLIL
KLRQHYRELCQQREGIEPPRESFNRWMLERKVVDKGSDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKF
REEAKRLLFKYAEAARRLIESRSASPDSRKVVKWNVEDTFSWLRKDHSASKEDYMDRLEHLRRQCGPHVS
AAAKDSVEGICSKIYHISLEYVKRIREKHLAILKENNISEEVEAPEVEPRLVYCYPVRLAVSAPPMPSVE
MHMENNVVCIRYKGEMVKVSRNYFSKLWLLYRYSCIDDSAFERFLPRVWCLLRRYQMMFGVGLYEGTGLQ
GSLPVHVFEALHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFAPLSGSFEANPPFCEEL
MDAMVSHFERLLESSPEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLILPAFEHEYRSGSQHICKKEE
MHYKAVHNTAVLFLQNDPGFAKWAPTPERLQELSAAYRQSGRSHSSGSSSSSSSEAKDRDSGREQGPSRE
PHPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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