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Report for CCDS10670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10670.1 Public Homo sapiens 16 TBX6 24 110 108 CCDS HistoryNCBI Gene:6911Re-query CCDS DB by CCDS ID:10670.1Re-query CCDS DB by GeneID:6911See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10670.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000279386.6 ENSP00000279386.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000279386.6Link to Ensembl Protein Viewer:ENSP00000279386.2Re-query CCDS DB by Nucleotide ID:ENST00000279386Re-query CCDS DB by Protein ID:ENSP00000279386
Original member Current member EBI ENST00000395224.7 ENSP00000378650.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395224.7Link to Ensembl Protein Viewer:ENSP00000378650.2Re-query CCDS DB by Nucleotide ID:ENST00000395224Re-query CCDS DB by Protein ID:ENSP00000378650
Original member Current member NCBI NM_004608.4 NP_004599.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004608.4Link to Protein Sequence:NP_004599.2Re-query CCDS DB by Nucleotide ID:NM_004608Re-query CCDS DB by Protein ID:NP_004599Link to BLAST:NP_004599.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004599.2 436 O95947-1 436 100% 0 0

Chromosomal Locations for CCDS 10670.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30086225 30086438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30086512 30086695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30086778 30086851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30088545 30088615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30088693 30088839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30088943 30089210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30090758 30090992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30091076 30091193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGTACCATCCACGAGAATTGTACCCGTCCCTGGGGGCCGGCTACCGCCTGGGGCCCGCCCAACCTGGGG
CCGACTCCAGCTTCCCACCCGCCCTAGCGGAGGGCTACCGCTACCCCGAACTGGACACCCCTAAACTGGA
TTGCTTCCTCTCCGGGATGGAGGCTGCTCCCCGCACCCTGGCCGCGCACCCACCTCTGCCCCTTCTGCCC
CCTGCCATGGGCACTGAGCCGGCCCCATCAGCTCCAGAGGCCCTCCATTCCCTCCCGGGGGTCAGCCTGA
GCCTGGAGAACCGGGAGCTATGGAAGGAGTTCAGCTCTGTGGGAACAGAAATGATCATCACCAAAGCTGG
GAGGCGCATGTTCCCTGCCTGCCGAGTGTCAGTCACTGGCCTGGACCCCGAGGCCCGCTACTTGTTTCTT
CTGGATGTGATTCCGGTGGATGGGGCTCGCTACCGCTGGCAGGGCCGGCGCTGGGAGCCCAGCGGCAAGG
CAGAGCCCCGCCTGCCTGACCGTGTCTACATTCACCCCGACTCTCCTGCCACTGGTGCACATTGGATGCG
GCAGCCTGTGTCTTTCCATCGTGTCAAGCTCACCAACAGCACGCTGGACCCCCACGGCCACCTGATCCTG
CACTCCATGCACAAGTACCAACCCCGCATACACCTAGTTCGGGCAGCCCAGCTCTGCAGCCAGCACTGGG
GGGGCATGGCCTCCTTCCGCTTCCCCGAGACCACATTCATCTCCGTGACAGCCTACCAGAACCCACAGAT
CACACAACTGAAGATTGCAGCCAATCCCTTTGCCAAAGGCTTCCGGGAGAACGGCAGAAACTGTAAGAGG
GAGCGAGACGCCCGTGTGAAGAGGAAACTGCGGGGCCCAGAGCCAGCAGCCACAGAGGCCTATGGGAGCG
GAGACACACCAGGTGGTCCCTGCGACTCCACCCTGGGTGGAGACATTCGTGAATCAGATCCAGAACAGGC
CCCAGCCCCCGGGGAAGCCACCGCTGCCCCGGCACCTCTGTGTGGTGGCCCCAGTGCTGAGGCCTACCTC
CTGCACCCTGCGGCTTTCCATGGGGCCCCCAGTCACCTTCCCACCAGGAGCCCCAGCTTCCCGGAGGCTC
CAGACTCCGGGCGCTCAGCCCCCTACTCGGCTGCATTTCTGGAGCTGCCGCACGGGTCAGGGGGCTCCGG
GTACCCAGCGGCTCCACCGGCGGTACCCTTTGCCCCGCACTTTCTCCAAGGGGGCCCCTTCCCTCTACCA
TACACCGCGCCTGGGGGCTATCTGGATGTGGGCTCCAAACCCATGTACTGA

Translation (436 aa):
MYHPRELYPSLGAGYRLGPAQPGADSSFPPALAEGYRYPELDTPKLDCFLSGMEAAPRTLAAHPPLPLLP
PAMGTEPAPSAPEALHSLPGVSLSLENRELWKEFSSVGTEMIITKAGRRMFPACRVSVTGLDPEARYLFL
LDVIPVDGARYRWQGRRWEPSGKAEPRLPDRVYIHPDSPATGAHWMRQPVSFHRVKLTNSTLDPHGHLIL
HSMHKYQPRIHLVRAAQLCSQHWGGMASFRFPETTFISVTAYQNPQITQLKIAANPFAKGFRENGRNCKR
ERDARVKRKLRGPEPAATEAYGSGDTPGGPCDSTLGGDIRESDPEQAPAPGEATAAPAPLCGGPSAEAYL
LHPAAFHGAPSHLPTRSPSFPEAPDSGRSAPYSAAFLELPHGSGGSGYPAAPPAVPFAPHFLQGGPFPLP
YTAPGGYLDVGSKPMY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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