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Report for CCDS56447.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56447.1 Public Homo sapiens 6 MCM9 24 110 108 CCDS HistoryNCBI Gene:254394Re-query CCDS DB by CCDS ID:56447.1Re-query CCDS DB by GeneID:254394See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 56447.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316316.10 ENSP00000314505.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000316316.10Link to Ensembl Protein Viewer:ENSP00000314505.5Re-query CCDS DB by Nucleotide ID:ENST00000316316Re-query CCDS DB by Protein ID:ENSP00000314505
Original member Current member EBI ENST00000619706.5 ENSP00000480469.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000619706.5Link to Ensembl Protein Viewer:ENSP00000480469.1Re-query CCDS DB by Nucleotide ID:ENST00000619706Re-query CCDS DB by Protein ID:ENSP00000480469
Original member Current member NCBI NM_001378356.1 NP_001365285.1 Accepted alive Link to Nucleotide Sequence:NM_001378356.1Link to Protein Sequence:NP_001365285.1Re-query CCDS DB by Nucleotide ID:NM_001378356Re-query CCDS DB by Protein ID:NP_001365285Link to BLAST:NP_001365285.1
Original member Current member NCBI NM_001378357.1 NP_001365286.1 Accepted alive Link to Nucleotide Sequence:NM_001378357.1Link to Protein Sequence:NP_001365286.1Re-query CCDS DB by Nucleotide ID:NM_001378357Re-query CCDS DB by Protein ID:NP_001365286Link to BLAST:NP_001365286.1
Original member Current member NCBI NM_017696.3 NP_060166.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017696.3Link to Protein Sequence:NP_060166.2Re-query CCDS DB by Nucleotide ID:NM_017696Re-query CCDS DB by Protein ID:NP_060166Link to BLAST:NP_060166.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365285.1 1143 Q9NXL9-1 1143 100% 0 0
NP_001365286.1 1143 Q9NXL9-1 1143 100% 0 0
NP_060166.2 1143 Q9NXL9-1 1143 100% 0 0

Chromosomal Locations for CCDS 56447.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 118814824 118816294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118826147 118826292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118826782 118826864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118827927 118828130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118829048 118829250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118856371 118856545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118911650 118911769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118913295 118913420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118917561 118917761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118922005 118922086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118923811 118924127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118931420 118931723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3432 nt):
ATGAATAGCGATCAAGTTACACTGGTTGGTCAAGTGTTTGAGTCATATGTTTCGGAATACCATAAGAATG
ATATTCTTCTAATCTTGAAGGAAAGGGATGAAGATGCTCATTACCCAGTTGTGGTTAATGCCATGACTCT
GTTTGAGACCAACATGGAAATCGGGGAATATTTCAACATGTTCCCCAGTGAAGTGCTTACAATTTTTGAT
AGTGCACTGCGAAGGTCAGCCTTGACAATTCTCCAGTCCCTTTCTCAGCCTGAGGCTGTTTCCATGAAAC
AGAATCTTCATGCCAGGATATCAGGTTTGCCTGTCTGTCCTGAGCTGGTGAGGGAACACATACCTAAAAC
CAAGGATGTGGGACACTTTTTATCTGTCACTGGGACAGTGATTCGAACAAGTCTGGTGAAGGTTCTGGAG
TTTGAGCGGGATTACATGTGTAACAAATGCAAGCATGTGTTTGTGATCAAGGCTGACTTTGAGCAGTATT
ACACCTTTTGCCGGCCATCCTCGTGTCCCAGCTTGGAGAGCTGTGATTCCTCTAAATTCACTTGCCTCTC
AGGCTTGTCTTCGTCTCCAACCAGGTGTAGAGATTACCAGGAAATCAAAATTCAGGAACAGGTTCAAAGG
CTATCTGTTGGAAGTATTCCACGATCTATGAAGGTTATTCTGGAAGATGACTTAGTGGATAGTTGCAAAT
CTGGTGATGACCTCACTATTTACGGGATTGTAATGCAACGGTGGAAGCCCTTTCAGCAAGATGTGCGCTG
TGAAGTGGAGATAGTCCTGAAAGCAAATTACATCCAAGTAAATAATGAGCAGTCCTCAGGGATCATCATG
GATGAGGAGGTCCAAAAGGAATTCGAAGATTTTTGGGAATACTATAAGAGCGATCCCTTTGCAGGAAGGA
ATGTAATATTGGCTAGCTTGTGCCCTCAAGTGTTTGGAATGTATCTAGTAAAGCTTGCTGTGGCCATGGT
GCTGGCTGGTGGGATTCAAAGGACTGATGCTACAGGAACACGGGTCAGAGGAGAATCTCATCTTTTATTG
GTTGGGGATCCTGGCACAGGGAAATCTCAGTTCCTCAAATATGCAGCAAAGATTACACCAAGATCTGTGC
TGACCACAGGAATTGGATCTACTAGTGCAGGTCTGACGGTAACTGCTGTAAAAGACTCAGGAGAATGGAA
TTTGGAGGCTGGGGCATTAGTTCTTGCAGATGCGGGCCTTTGCTGTATTGATGAGTTCAATAGCCTCAAA
GAGCATGATAGGACCAGTATCCATGAAGCAATGGAGCAACAAACCATAAGTGTTGCTAAGGCTGGCCTCG
TGTGCAAGCTGAACACAAGGACCACCATCCTGGCAGCAACGAACCCCAAAGGCCAGTACGACCCCCAGGA
GTCCGTGTCTGTGAACATTGCCCTCGGCAGCCCACTCTTAAGTCGATTTGACCTGATCCTGGTTTTGCTT
GATACCAAGAATGAAGACTGGGATCGTATCATTTCCTCCTTTATCTTAGAAAATAAAGGTTACCCAAGCA
AATCAGAGAAGCTCTGGAGCATGGAAAAGATGAAAACCTATTTCTGCCTCATAAGGAATCTGCAGCCCAC
ACTGTCTGATGTGGGCAATCAGGTTCTTCTCCGGTACTACCAGATGCAAAGGCAGAGTGATTGCCGGAAC
GCTGCCCGGACCACCATTCGGCTGTTGGAAAGCTTGATACGATTAGCAGAAGCTCATGCTCGCCTGATGT
TTCGTGATACTGTAACTCTGGAAGACGCTATTACGGTGGTGTCAGTCATGGAGTCCTCAATGCAGGGAGG
TGCACTGCTAGGAGGTGTGAATGCCCTCCACACTTCCTTTCCTGAAAACCCTGGAGAGCAGTACCAGAGA
CAGTGTGAACTTATTCTGGAAAAGCTAGAGCTGCAGAGCCTCTTGAGTGAAGAGCTTAGAAGACTTGAAA
GGTTACAGAATCAGAGTGTGCACCAATCCCAACCACGGGTATTGGAGGTAGAGACTACTCCAGGATCCTT
GAGAAATGGTCCAGGGGAAGAATCAAACTTCAGAACTTCATCACAGCAGGAAATCAACTATAGCACACAT
ATCTTCTCTCCTGGAGGCAGCCCCGAGGGAAGCCCAGTTCTAGATCCCCCACCGCATCTGGAGCCTAATA
GATCAACAAGTAGGAAACATTCAGCTCAGCACAAAAATAACAGAGATGACAGTTTAGATTGGTTTGATTT
CATGGCAACTCATCAGAGTGAACCTAAAAACACTGTTGTTGTGTCTCCTCATCCCAAAACATCTGGAGAA
AATATGGCTTCGAAGATCTCTAACAGCACATCTCAGGGTAAGGAGAAGAGTGAGCCAGGCCAAAGGAGCA
AAGTGGACATTGGGTTGCTTCCATCACCAGGAGAGACAGGTGTTCCATGGAGGGCAGACAATGTGGAAAG
TAACAAGAAAAAAAGGCTAGCACTAGATTCTGAAGCAGCAGTCTCTGCTGATAAACCAGACTCAGTACTG
ACTCATCATGTCCCCAGGAACCTGCAGAAGCTGTGCAAAGAGAGGGCCCAGAAGTTGTGCAGAAATAGCA
CCAGGGTGCCTGCACAGTGCACAGTCCCTTCCCATCCTCAGTCCACTCCTGTACATAGCCCAGACAGAAT
GCTGGACTCACCCAAAAGAAAGAGACCGAAATCCCTTGCGCAAGTGGAAGAGCCTGCAATTGAAAATGTT
AAGCCTCCAGGTTCCCCTGTGGCCAAACTGGCAAAATTTACTTTCAAGCAGAAGTCAAAACTGATCCACT
CCTTTGAAGATCACAGCCATGTGTCACCTGGTGCAACTAAAATAGCAGTTCATAGTCCTAAAATTTCCCA
GCGTAGAACAAGAAGAGACGCAGCCTTGCCGGTGAAGCGTCCAGGAAAGTTAACATCTACCCCAGGAAAC
CAGATCTCCAGTCAGCCACAGGGTGAGACAAAGGAGGTGTCGCAGCAGCCACCAGAGAAACACGGACCAA
GAGAGAAGGTGATGTGTGCCCCTGAGAAGAGGATTATTCAGCCTGAATTAGAGCTTGGGAACGAGACTGG
GTGTGCTCATCTTACTTGTGAGGGAGACAAAAAGGAAGAGGTTTCAGGCAGTAATAAAAGCGGCAAGGTT
CATGCCTGCACATTAGCCAGATTGGCAAACTTCTGCTTTACTCCCCCATCGGAATCCAAATCAAAATCCC
CTCCTCCTGAAAGGAAGAACCGAGGTGAGAGAGGCCCAAGCTCCCCTCCTACAACCACAGCTCCAATGCG
TGTCAGTAAAAGGAAATCTTTTCAGCTCCGTGGGTCCACCGAGAAACTGATTGTTTCCAAAGAATCCCTC
TTCACTTTACCAGAACTAGGTGATGAAGCATTTGATTGTGACTGGGATGAAGAGATGAGAAAAAAGTCAT
AG

Translation (1143 aa):
MNSDQVTLVGQVFESYVSEYHKNDILLILKERDEDAHYPVVVNAMTLFETNMEIGEYFNMFPSEVLTIFD
SALRRSALTILQSLSQPEAVSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKVLE
FERDYMCNKCKHVFVIKADFEQYYTFCRPSSCPSLESCDSSKFTCLSGLSSSPTRCRDYQEIKIQEQVQR
LSVGSIPRSMKVILEDDLVDSCKSGDDLTIYGIVMQRWKPFQQDVRCEVEIVLKANYIQVNNEQSSGIIM
DEEVQKEFEDFWEYYKSDPFAGRNVILASLCPQVFGMYLVKLAVAMVLAGGIQRTDATGTRVRGESHLLL
VGDPGTGKSQFLKYAAKITPRSVLTTGIGSTSAGLTVTAVKDSGEWNLEAGALVLADAGLCCIDEFNSLK
EHDRTSIHEAMEQQTISVAKAGLVCKLNTRTTILAATNPKGQYDPQESVSVNIALGSPLLSRFDLILVLL
DTKNEDWDRIISSFILENKGYPSKSEKLWSMEKMKTYFCLIRNLQPTLSDVGNQVLLRYYQMQRQSDCRN
AARTTIRLLESLIRLAEAHARLMFRDTVTLEDAITVVSVMESSMQGGALLGGVNALHTSFPENPGEQYQR
QCELILEKLELQSLLSEELRRLERLQNQSVHQSQPRVLEVETTPGSLRNGPGEESNFRTSSQQEINYSTH
IFSPGGSPEGSPVLDPPPHLEPNRSTSRKHSAQHKNNRDDSLDWFDFMATHQSEPKNTVVVSPHPKTSGE
NMASKISNSTSQGKEKSEPGQRSKVDIGLLPSPGETGVPWRADNVESNKKKRLALDSEAAVSADKPDSVL
THHVPRNLQKLCKERAQKLCRNSTRVPAQCTVPSHPQSTPVHSPDRMLDSPKRKRPKSLAQVEEPAIENV
KPPGSPVAKLAKFTFKQKSKLIHSFEDHSHVSPGATKIAVHSPKISQRRTRRDAALPVKRPGKLTSTPGN
QISSQPQGETKEVSQQPPEKHGPREKVMCAPEKRIIQPELELGNETGCAHLTCEGDKKEEVSGSNKSGKV
HACTLARLANFCFTPPSESKSKSPPPERKNRGERGPSSPPTTTAPMRVSKRKSFQLRGSTEKLIVSKESL
FTLPELGDEAFDCDWDEEMRKKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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