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Report for CCDS4040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4040.1 Public Homo sapiens 5 TBCA 24 110 108 CCDS HistoryNCBI Gene:6902Re-query CCDS DB by CCDS ID:4040.1Re-query CCDS DB by GeneID:6902See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4040.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380377.9 ENSP00000369736.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380377.9Link to Ensembl Protein Viewer:ENSP00000369736.4Re-query CCDS DB by Nucleotide ID:ENST00000380377Re-query CCDS DB by Protein ID:ENSP00000369736
Original member Current member NCBI NM_004607.3 NP_004598.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004607.3Link to Protein Sequence:NP_004598.1Re-query CCDS DB by Nucleotide ID:NM_004607Re-query CCDS DB by Protein ID:NP_004598Link to BLAST:NP_004598.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004598.1 108 O75347-1 108 100% 0 0

Chromosomal Locations for CCDS 4040.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 77691418 77691498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77693266 77693352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77708242 77708347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77776205 77776257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGGCCGATCCTCGCGTGAGACAGATCAAGATCAAGACCGGCGTGGTGAAGCGGTTGGTCAAAGAAAAAG
TGATGTATGAAAAAGAGGCAAAACAACAAGAAGAAAAGATTGAAAAAATGAGAGCTGAAGACGGTGAAAA
TTATGACATTAAAAAGCAGGCAGAGATCCTACAAGAATCCAGGATGATGATCCCAGATTGCCAGCGCAGG
TTGGAAGCCGCATATTTGGATCTTCAACGGATACTAGAAAATGAAAAAGACTTGGAAGAAGCTGAGGAAT
ATAAAGAAGCACGTTTAGTACTGGATTCAGTGAAGTTAGAAGCCTGA

Translation (108 aa):
MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRR
LEAAYLDLQRILENEKDLEEAEEYKEARLVLDSVKLEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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