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Report for CCDS4233.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4233.2 Public Homo sapiens 5 TMCO6 24 110 108 CCDS HistoryNCBI Gene:55374Re-query CCDS DB by CCDS ID:4233.2Re-query CCDS DB by GeneID:55374See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4233.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394671.8 ENSP00000378166.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394671.8Link to Ensembl Protein Viewer:ENSP00000378166.3Re-query CCDS DB by Nucleotide ID:ENST00000394671Re-query CCDS DB by Protein ID:ENSP00000378166
Original member Current member NCBI NM_018502.5 NP_060972.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018502.5Link to Protein Sequence:NP_060972.3Re-query CCDS DB by Nucleotide ID:NM_018502Re-query CCDS DB by Protein ID:NP_060972Link to BLAST:NP_060972.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060972.3 493 Q96DC7-1 493 100% 0 0

Chromosomal Locations for CCDS 4233.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140639528 140639612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140639739 140639851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140641665 140641780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140641870 140642053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140642315 140642419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140642586 140642671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140642925 140643041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140643564 140643675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140643780 140643966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140644100 140644194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140644573 140644740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140644985 140645098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGTGGAGCCGACGGCAGGGCCGCCTCAGGCCCACGGTCTGCGGGGTGGAGGAGCTACGGCGCCGCCGGC
GGGAGCGGGAGGCAGCACTGCGGAAGGCGCGGAGGGAGCAGCAGCTGGTCAGCAAGAGGCTGCTGAGAAA
CGACGCCCCAGAGGAAGCTGGAGAGGGATGTGTGGCTGCGATCCTCGGGGAAACCGAGGTGCAGCAGTTC
CTGCGGCAAGCCCAGCGGGGGACAGAGGAAAAGGAGAGAGAGGGGGCTCTGGTCAGCCTTCGTCGAGGCT
TGCAGCACCCTGAAACACAGCAAACCTTCATCCGGCTGGAGGGCAGCATGCGGACCCTGGTCGGGCTCCT
GACCAGCAACCAGGCCCTGCTGCAGCTTGAGGCGGCTCGGTGCCTGCATGAGCTCTCTCACTCCGAGCAG
TCCACTGTTGCTGAGGCCTGCCTGCCAGCCACTTCTTACCTCCTCACCTACCTCTCCAGTCACAGCTCAG
ACTTCATAGAGCTGTGTCTGTATACACTGGGTAACCTGATCGTGGAGAGTGAGGCTGTGAGAAGGCAGCT
CCTGCCACAGGGCATTGTTCCAGCCTTGGCTGCCTGCATCCAGTCCCCCCATGTGGCTGTGCTGGAAGCT
CTCGGATATGCCTTGTCCCAGCTTCTACAGGCTGAGGAAGCTCCAGAGAAGATCATTCCCTCCATCTTGG
CCTCCACTCTCCCTCAGCACATGCTACAAATGTTGCAACCTGGCCCAAAGCTCAACCCTGGGGTCGCTGT
GGAGTTTGCCTGGTGCCTTCATTACATCATCTGCAGCCAGGTCAGCAATCCTCTGCTCATTGGCCATGGG
GCTCTGTCTACTCTGGGGTTGCTGCTGTTGGACTTGGCTGGGGCTGTCCAGAAAACCGAGGATGCAGGAC
TGGAGCTGCTGGCATGCCCCGTGCTTCGATGTCTAAGCAACCTGCTAACTGAGGCAGCAGTGGAGACTGT
GGGAGGGCAAATGCAGCTCAGAGATGAGCGTGTTGTGGCAGCCTTATTTATCCTTCTGCAGTTCTTTTTC
CAGAAACAGCCCAGTCTGCTCCCTGAGGGCCTTTGGCTCCTCAACAACCTCACTGCAAACAGTCCTAGTT
TCTGTACCTCCTTGCTCTCCCTGGATCTGATTGAGCCTCTCTTACAGCTGTTGCCAGTATCTAACGTGGT
GAGCGTAATGGTGCTCACAGTTCTGTGCAATGTTGCAGAAAAGGGTCCTGCTTACTGCCAGCGGCTGTGG
CCAGGGCCCCTGCTTCCCGCCTTGCTGCACACACTAGCCTTTTCTGACACTGAAGTAGTAGGCCAGAGTT
TGGAGCTGCTGCATCTGCTGTTCCTGTATCAGCCAGAGGCTGTTCAGGTCTTCCTGCAGCAGTCAGGGCT
GCAAGCCCTGGAAAGGCATCAGGAAGAGGCCCAGCTCCAGGATCGTGTGTATGCTCTCCAGCAGACAGCT
CTTCAAGGGTGA

Translation (493 aa):
MWSRRQGRLRPTVCGVEELRRRRREREAALRKARREQQLVSKRLLRNDAPEEAGEGCVAAILGETEVQQF
LRQAQRGTEEKEREGALVSLRRGLQHPETQQTFIRLEGSMRTLVGLLTSNQALLQLEAARCLHELSHSEQ
STVAEACLPATSYLLTYLSSHSSDFIELCLYTLGNLIVESEAVRRQLLPQGIVPALAACIQSPHVAVLEA
LGYALSQLLQAEEAPEKIIPSILASTLPQHMLQMLQPGPKLNPGVAVEFAWCLHYIICSQVSNPLLIGHG
ALSTLGLLLLDLAGAVQKTEDAGLELLACPVLRCLSNLLTEAAVETVGGQMQLRDERVVAALFILLQFFF
QKQPSLLPEGLWLLNNLTANSPSFCTSLLSLDLIEPLLQLLPVSNVVSVMVLTVLCNVAEKGPAYCQRLW
PGPLLPALLHTLAFSDTEVVGQSLELLHLLFLYQPEAVQVFLQQSGLQALERHQEEAQLQDRVYALQQTA
LQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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