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Report for CCDS11830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11830.1 Public Homo sapiens 18 MYL12A 24 110 108 CCDS HistoryNCBI Gene:10627Re-query CCDS DB by CCDS ID:11830.1Re-query CCDS DB by GeneID:10627See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11830.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217652.8 ENSP00000217652.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217652.8Link to Ensembl Protein Viewer:ENSP00000217652.3Re-query CCDS DB by Nucleotide ID:ENST00000217652Re-query CCDS DB by Protein ID:ENSP00000217652
Original member Current member EBI ENST00000536605.1 ENSP00000441231.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536605.1Link to Ensembl Protein Viewer:ENSP00000441231.1Re-query CCDS DB by Nucleotide ID:ENST00000536605Re-query CCDS DB by Protein ID:ENSP00000441231
Original member Current member EBI ENST00000579226.5 ENSP00000462171.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000579226.5Link to Ensembl Protein Viewer:ENSP00000462171.1Re-query CCDS DB by Nucleotide ID:ENST00000579226Re-query CCDS DB by Protein ID:ENSP00000462171
Original member Current member EBI ENST00000578611.5 ENSP00000463614.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000578611.5Link to Ensembl Protein Viewer:ENSP00000463614.1Re-query CCDS DB by Nucleotide ID:ENST00000578611Re-query CCDS DB by Protein ID:ENSP00000463614
Original member Current member NCBI NM_001303047.2 NP_001289976.1 Accepted alive Link to Nucleotide Sequence:NM_001303047.2Link to Protein Sequence:NP_001289976.1Re-query CCDS DB by Nucleotide ID:NM_001303047Re-query CCDS DB by Protein ID:NP_001289976Link to BLAST:NP_001289976.1
Original member Current member NCBI NM_001303048.1 NP_001289977.1 Accepted alive Link to Nucleotide Sequence:NM_001303048.1Link to Protein Sequence:NP_001289977.1Re-query CCDS DB by Nucleotide ID:NM_001303048Re-query CCDS DB by Protein ID:NP_001289977Link to BLAST:NP_001289977.1
Original member Current member NCBI NM_006471.4 NP_006462.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006471.4Link to Protein Sequence:NP_006462.1Re-query CCDS DB by Nucleotide ID:NM_006471Re-query CCDS DB by Protein ID:NP_006462Link to BLAST:NP_006462.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289976.1 171 P19105 171 100% 0 0
NP_001289977.1 171 P19105 171 100% 0 0
NP_006462.1 171 P19105 171 100% 0 0

Chromosomal Locations for CCDS 11830.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 3253248 3253428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3253889 3254050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3255746 3255918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGTCGAGCAAAAGAACAAAGACCAAGACCAAGAAGCGCCCTCAGCGTGCAACATCCAATGTGTTTGCTA
TGTTTGACCAGTCACAGATTCAGGAGTTCAAAGAGGCCTTCAACATGATTGATCAGAACAGAGATGGTTT
CATCGACAAGGAAGATTTGCATGATATGCTTGCTTCATTGGGGAAGAATCCAACTGATGAGTATCTAGAT
GCCATGATGAATGAGGCTCCAGGCCCCATCAATTTCACCATGTTCCTCACCATGTTTGGTGAGAAGTTAA
ATGGCACAGATCCTGAAGATGTCATCAGAAATGCCTTTGCTTGCTTTGATGAAGAAGCAACTGGCACCAT
ACAGGAAGATTACTTGAGAGAGCTGCTGACAACCATGGGGGATCGGTTTACAGATGAGGAAGTGGATGAG
CTGTACAGAGAAGCACCTATTGATAAAAAGGGGAATTTCAATTACATCGAGTTCACACGCATCCTGAAAC
ATGGAGCCAAAGACAAAGATGACTGA

Translation (171 aa):
MSSKRTKTKTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDEYLD
AMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDE
LYREAPIDKKGNFNYIEFTRILKHGAKDKDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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