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Report for CCDS94175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94175.1 Public Homo sapiens 7 SYPL1 24 110 108 CCDS HistoryNCBI Gene:6856Re-query CCDS DB by CCDS ID:94175.1Re-query CCDS DB by GeneID:6856See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94175.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000706299.1 ENSP00000516340.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000706299.1Link to Ensembl Protein Viewer:ENSP00000516340.1Re-query CCDS DB by Nucleotide ID:ENST00000706299Re-query CCDS DB by Protein ID:ENSP00000516340
Original member Current member NCBI NM_001381910.1 NP_001368839.1 Accepted alive Link to Nucleotide Sequence:NM_001381910.1Link to Protein Sequence:NP_001368839.1Re-query CCDS DB by Nucleotide ID:NM_001381910Re-query CCDS DB by Protein ID:NP_001368839Link to BLAST:NP_001368839.1

Chromosomal Locations for CCDS 94175.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 106091805 106091939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106092949 106093137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106097690 106097897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106099158 106099282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106111313 106111390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106112140 106112211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106112479 106112529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGCGCCCAACATCTACTTGGTTCGCCAGCGGATCAGTCGACTCGGCCAGAGGATGTCCGGCTTCCAGA
TCAACCTCAACCCGCTCAAGGAGCCACTCGGCTTCATCAAGGTCCTCGAGTGGTTACTTGGAGGAGTTGG
TGAATATACCAGGCACTGCGGGCTTCCTTCAAACTTCGCGGCCCACTACATATTTCTGCAGATTGCTTCT
ATCTTTGCTTTTGCCACCTGTGGAGGTTTTAAGGGCCAAACAGAAATTCAAGTGAATTGTCCTCCTGCAG
TTACTGAGAATAAAACTGTTACAGCTACTTTTGGTTATCCATTCAGGTTGAATGAGGCATCATTTCAGCC
ACCTCCAGGTGTAAACATATGTGATGTAAATTGGAAAGATTACGTCCTCATAGGCGATTACTCTTCTTCT
GCACAATTCTATGTTACCTTTGCAGTCTTTGTGTTCCTGTACTGCATTGCTGCCCTTCTGCTTTATGTTG
GCTACACGAGTCTGTATCTGGATAGTCGTAAACTTCCTATGATAGACTTTGTTGTTACACTTGTTGCCAC
TTTTTTGTGGTTGGTGAGCACTTCAGCCTGGGCTAAAGCTCTGACAGATATTAAAATAGCTACTGGTCAC
AATATTATTGATGAACTTCCGCCTTGTAAGAAGAAAGCAGTACTGTGTTACTTTGGCTCTGTGACCAGTA
TGGGATCCCTAAATGTATCTGTGATATTTGGCTTTCTAAATATGATACTCTGGGGAGGAAATGCTTGGTT
TGTGTACAAGGAGACCAGCCTACACAGTCCATCAAATACATCTGCCCCTCATAGCCAAGGAGGTATTCCA
CCTCCTACCGGAATATAA

Translation (285 aa):
MAPNIYLVRQRISRLGQRMSGFQINLNPLKEPLGFIKVLEWLLGGVGEYTRHCGLPSNFAAHYIFLQIAS
IFAFATCGGFKGQTEIQVNCPPAVTENKTVTATFGYPFRLNEASFQPPPGVNICDVNWKDYVLIGDYSSS
AQFYVTFAVFVFLYCIAALLLYVGYTSLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATGH
NIIDELPPCKKKAVLCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWFVYKETSLHSPSNTSAPHSQGGIP
PPTGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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