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Report for CCDS10060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10060.1 Public Homo sapiens 15 CCDC32 24 110 108 CCDS HistoryNCBI Gene:90416Re-query CCDS DB by CCDS ID:10060.1Re-query CCDS DB by GeneID:90416See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 10060.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358005.7 ENSP00000350695.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358005.7Link to Ensembl Protein Viewer:ENSP00000350695.3Re-query CCDS DB by Nucleotide ID:ENST00000358005Re-query CCDS DB by Protein ID:ENSP00000350695
Original member Current member EBI ENST00000416810.7 ENSP00000397515.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000416810.7Link to Ensembl Protein Viewer:ENSP00000397515.2Re-query CCDS DB by Nucleotide ID:ENST00000416810Re-query CCDS DB by Protein ID:ENSP00000397515
Original member Current member EBI ENST00000559291.5 ENSP00000453226.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000559291.5Link to Ensembl Protein Viewer:ENSP00000453226.1Re-query CCDS DB by Nucleotide ID:ENST00000559291Re-query CCDS DB by Protein ID:ENSP00000453226
Original member Current member EBI ENST00000559153.5 ENSP00000453607.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000559153.5Link to Ensembl Protein Viewer:ENSP00000453607.1Re-query CCDS DB by Nucleotide ID:ENST00000559153Re-query CCDS DB by Protein ID:ENSP00000453607
Original member Current member NCBI NM_001080791.4 NP_001074260.2 Accepted alive Link to Nucleotide Sequence:NM_001080791.4Link to Protein Sequence:NP_001074260.2Re-query CCDS DB by Nucleotide ID:NM_001080791Re-query CCDS DB by Protein ID:NP_001074260Link to BLAST:NP_001074260.2
Original member Current member NCBI NM_001080792.4 NP_001074261.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080792.4Link to Protein Sequence:NP_001074261.1Re-query CCDS DB by Nucleotide ID:NM_001080792Re-query CCDS DB by Protein ID:NP_001074261Link to BLAST:NP_001074261.1
Original member Current member NCBI NM_001382434.1 NP_001369363.1 Accepted alive Link to Nucleotide Sequence:NM_001382434.1Link to Protein Sequence:NP_001369363.1Re-query CCDS DB by Nucleotide ID:NM_001382434Re-query CCDS DB by Protein ID:NP_001369363Link to BLAST:NP_001369363.1
Original member Current member NCBI NM_001382435.1 NP_001369364.1 Accepted alive Link to Nucleotide Sequence:NM_001382435.1Link to Protein Sequence:NP_001369364.1Re-query CCDS DB by Nucleotide ID:NM_001382435Re-query CCDS DB by Protein ID:NP_001369364Link to BLAST:NP_001369364.1
Original member Current member NCBI NM_001382436.1 NP_001369365.1 Accepted alive Link to Nucleotide Sequence:NM_001382436.1Link to Protein Sequence:NP_001369365.1Re-query CCDS DB by Nucleotide ID:NM_001382436Re-query CCDS DB by Protein ID:NP_001369365Link to BLAST:NP_001369365.1
Original member Current member NCBI NM_052849.5 NP_443081.1 Accepted alive Link to Nucleotide Sequence:NM_052849.5Link to Protein Sequence:NP_443081.1Re-query CCDS DB by Nucleotide ID:NM_052849Re-query CCDS DB by Protein ID:NP_443081Link to BLAST:NP_443081.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074260.2 185 Q9BV29-1 185 100% 0 0
NP_001074261.1 185 Q9BV29-1 185 100% 0 0
NP_001369363.1 185 Q9BV29-1 185 100% 0 0
NP_001369364.1 185 Q9BV29-1 185 100% 0 0
NP_001369365.1 185 Q9BV29-1 185 100% 0 0
NP_443081.1 185 Q9BV29-1 185 100% 0 0

Chromosomal Locations for CCDS 10060.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 40553971 40554127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40557216 40557372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40562772 40563015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGAAAATGTTTGAGAGCGCTGACTCTACAGCCACAAGATCTGGCCAGGATCTCTGGGCTGAAATTTGTT
CCTGTCTGCCAAATCCTGAACAAGAAGATGGTGCCAACAATGCATTCTCAGACTCCTTTGTGGATTCTTG
CCCTGAAGGTGAAGGCCAGAGGGAGGTGGCTGACTTTGCTGTCCAGCCAGCTGTAAAGCCTTGGGCTCCC
TTGCAGGATTCAGAAGTGTATTTAGCATCTCTAGAGAAGAAGCTAAGAAGAATCAAAGGTTTAAATCAGG
AAGTGACTTCCAAGGACATGCTTCGAACTCTGGCCCAAGCCAAGAAGGAATGCTGGGATCGGTTCCTCCA
GGAGAAGTTAGCTTCAGAGTTCTTTGTGGATGGACTTGATTCTGATGAGAGCACCTTGGAACATTTCAAG
AGGTGGCTCCAGCCAGATAAAGTAGCCGTCAGCACAGAGGAGGTCCAGTATCTGATTCCTCCAGAGTCAC
AGGTTGAGAAGCCAGTGGCCGAGGACGAGCCAGCAGCCGGGGACAAGCCAGCAGCAGCAGAACAGTAA

Translation (185 aa):
MKMFESADSTATRSGQDLWAEICSCLPNPEQEDGANNAFSDSFVDSCPEGEGQREVADFAVQPAVKPWAP
LQDSEVYLASLEKKLRRIKGLNQEVTSKDMLRTLAQAKKECWDRFLQEKLASEFFVDGLDSDESTLEHFK
RWLQPDKVAVSTEEVQYLIPPESQVEKPVAEDEPAAGDKPAAAEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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