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Report for CCDS30015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30015.1 Public Mus musculus X Otc 23 108 98 CCDS HistoryNCBI Gene:18416Re-query CCDS DB by CCDS ID:30015.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30015.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049910.12 ENSMUSP00000056152.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049910.12Link to Ensembl Protein Viewer:ENSMUSP00000056152.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000049910Re-query CCDS DB by Protein ID:ENSMUSP00000056152
Original member NCBI NM_008769.4 NP_032795.1 Updated not alive Link to Nucleotide Sequence:NM_008769.4Link to Protein Sequence:NP_032795.1Re-query CCDS DB by Nucleotide ID:NM_008769Re-query CCDS DB by Protein ID:NP_032795
Current member NCBI NM_008769.5 NP_032795.1 Accepted alive Link to Nucleotide Sequence:NM_008769.5Link to Protein Sequence:NP_032795.1Re-query CCDS DB by Nucleotide ID:NM_008769Re-query CCDS DB by Protein ID:NP_032795Link to BLAST:NP_032795.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032795.1 354 P11725 354 100% 0 0

Chromosomal Locations for CCDS 30015.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 10252437 10252513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10264796 10264934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10266824 10266905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10276639 10276726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10300315 10300468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10303261 10303383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10308769 10308822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10308911 10309060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10312393 10312530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10319843 10319902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGCTGTCTAATTTGAGGATCCTGCTCAACAATGCAGCTCTTAGAAAGGGTCACACTTCTGTGGTTCGAC
ATTTTTGGTGTGGGAAGCCAGTCCAAAGTCAAGTACAGCTGAAAGGCCGTGACCTCCTCACCTTGAAGAA
CTTCACAGGAGAGGAGATTCAGTACATGCTATGGCTCTCTGCAGATCTGAAATTCAGGATCAAGCAGAAA
GGAGAATATTTACCTTTATTGCAAGGGAAATCCTTAGGAATGATTTTTGAGAAAAGAAGTACTCGAACAA
GACTGTCCACAGAAACAGGCTTTGCTCTGCTGGGAGGACACCCTTCCTTTCTTACCACACAAGACATTCA
CTTGGGTGTGAATGAAAGTCTCACAGACACCGCTCGTGTCTTATCTAGCATGACAGATGCAGTGTTAGCT
CGAGTGTATAAACAATCAGATCTGGACACCCTGGCTAAAGAAGCATCCATCCCAATTGTCAATGGACTGT
CAGACTTGTATCATCCTATCCAGATCCTGGCTGATTACCTTACACTCCAGGAACACTATGGCTCTCTCAA
AGGTCTTACCCTCAGCTGGATAGGGGATGGGAACAATATCTTGCACTCTATCATGATGAGTGCTGCAAAA
TTCGGGATGCACCTTCAAGCAGCTACTCCAAAGGGTTATGAGCCAGATCCTAATATAGTCAAGCTAGCAG
AGCAGTATGCCAAGGAGAATGGTACCAAGTTGTCAATGACAAATGATCCACTGGAAGCAGCACGTGGAGG
CAATGTATTAATTACAGATACTTGGATAAGCATGGGACAAGAGGATGAGAAGAAAAAGCGTCTTCAAGCT
TTCCAAGGTTACCAGGTTACGATGAAGACTGCCAAAGTGGCTGCGTCTGACTGGACATTTTTACACTGTT
TGCCTAGAAAGCCAGAAGAAGTGGATGATGAAGTATTTTATTCTCCACGGTCATTAGTGTTCCCAGAGGC
AGAGAATAGAAAGTGGACAATCATGGCTGTCATGGTATCCCTGCTGACAGACTACTCACCTGTGCTCCAG
AAGCCAAAGTTTTGA

Translation (354 aa):
MLSNLRILLNNAALRKGHTSVVRHFWCGKPVQSQVQLKGRDLLTLKNFTGEEIQYMLWLSADLKFRIKQK
GEYLPLLQGKSLGMIFEKRSTRTRLSTETGFALLGGHPSFLTTQDIHLGVNESLTDTARVLSSMTDAVLA
RVYKQSDLDTLAKEASIPIVNGLSDLYHPIQILADYLTLQEHYGSLKGLTLSWIGDGNNILHSIMMSAAK
FGMHLQAATPKGYEPDPNIVKLAEQYAKENGTKLSMTNDPLEAARGGNVLITDTWISMGQEDEKKKRLQA
FQGYQVTMKTAKVAASDWTFLHCLPRKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLLTDYSPVLQ
KPKF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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