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Report for CCDS43030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43030.1 Public Homo sapiens 22 TTC38 24 110 108 CCDS HistoryNCBI Gene:55020Re-query CCDS DB by CCDS ID:43030.1Re-query CCDS DB by GeneID:55020See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43030.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381031.8 ENSP00000370419.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381031.8Link to Ensembl Protein Viewer:ENSP00000370419.3Re-query CCDS DB by Nucleotide ID:ENST00000381031Re-query CCDS DB by Protein ID:ENSP00000370419
Original member Current member NCBI NM_017931.4 NP_060401.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017931.4Link to Protein Sequence:NP_060401.3Re-query CCDS DB by Nucleotide ID:NM_017931Re-query CCDS DB by Protein ID:NP_060401Link to BLAST:NP_060401.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060401.3 469 Q5R3I4 469 100% 0 0

Chromosomal Locations for CCDS 43030.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 46268040 46268072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46268514 46268591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46272335 46272416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46273898 46274069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46275248 46275421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46278586 46278661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46281599 46281718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46283973 46284032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46285241 46285279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46287073 46287154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46288423 46288588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46289402 46289561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46289826 46289899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46292791 46292884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGCCGCAGCCTCGCCTCTGCGCGACTGCCAGGCCTGGAAGGATGCGAGGCTCCCGCTCTCCACCACAA
GCAACGAAGCCTGCAAGCTGTTCGATGCCACGCTGACCCAGTATGTAAAATGGACCAATGACAAGAGTCT
CGGTGGCATCGAGGGCTGCCTGTCAAAGCTCAAAGCAGCAGATCCAACCTTTGTGATGGGCCACGCCATG
GCTACTGGCCTTGTGCTGATTGGCACTGGAAGCTCCGTGAAGCTGGACAAAGAGCTGGACCTGGCTGTGA
AGACAATGGTGGAGATTTCAAGAACCCAGCCGCTGACAAGGCGGGAGCAGCTGCACGTGTCTGCAGTAGA
GACATTTGCCAATGGGAACTTTCCGAAAGCCTGTGAACTATGGGAACAGATTCTCCAGGACCACCCGACA
GACATGTTGGCCCTGAAATTTTCCCATGATGCTTATTTTTACCTGGGCTATCAGGAACAGATGAGAGATT
CTGTTGCTCGAATTTACCCCTTCTGGACACCTGACATCCCCCTAAGCAGCTATGTGAAAGGCATCTACTC
TTTTGGCTTGATGGAAACCAACTTCTACGACCAGGCAGAAAAACTCGCCAAAGAGGCTTTATCTATTAAC
CCGACAGACGCATGGTCGGTGCACACCGTCGCTCACATCCACGAGATGAAAGCAGAGATCAAGGATGGGT
TGGAATTCATGCAGCACTCAGAGACCTTCTGGAAGGACTCTGATATGTTGGCTTGTCATAACTATTGGCA
CTGGGCTTTATATCTGATTGAGAAGGGCGAATATGAGGCCGCGCTGACCATCTACGATACCCACATCCTT
CCCAGCCTGCAGGCCAACGATGCAATGCTGGACGTGGTGGACAGCTGCTCCATGCTCTACCGCCTGCAGA
TGGAAGGAGTGTCTGTGGGCCAGCGGTGGCAGGATGTCCTGCCTGTGGCCCGGAAGCACAGCCGAGACCA
CATCCTGCTGTTCAATGACGCACACTTCCTGATGGCATCCCTGGGTGCACACGACCCCCAGACCACACAG
GAGCTGCTGACCACCCTGCGGGACGCCAGCGAATCCCCAGGGGAGAACTGCCAGCACCTCCTGGCCCGAG
ACGTGGGGCTGCCCCTGTGCCAGGCCCTGGTGGAGGCTGAGGACGGGAACCCTGACCGCGTCCTGGAGCT
GCTCCTGCCCATCCGCTACCGGATCGTCCAGCTCGGTGGGAGCAATGCCCAGAGAGACGTCTTCAACCAG
CTGCTGATTCACGCGGCCTTAAACTGCACCTCCAGCGTCCATAAGAACGTAGCCCGGAGCCTTCTGATGG
AGCGTGATGCCTTGAAGCCCAACTCGCCCCTGACCGAGCGGCTCATCCGCAAGGCAGCTACCGTCCACCT
CATGCAGTGA

Translation (469 aa):
MAAASPLRDCQAWKDARLPLSTTSNEACKLFDATLTQYVKWTNDKSLGGIEGCLSKLKAADPTFVMGHAM
ATGLVLIGTGSSVKLDKELDLAVKTMVEISRTQPLTRREQLHVSAVETFANGNFPKACELWEQILQDHPT
DMLALKFSHDAYFYLGYQEQMRDSVARIYPFWTPDIPLSSYVKGIYSFGLMETNFYDQAEKLAKEALSIN
PTDAWSVHTVAHIHEMKAEIKDGLEFMQHSETFWKDSDMLACHNYWHWALYLIEKGEYEAALTIYDTHIL
PSLQANDAMLDVVDSCSMLYRLQMEGVSVGQRWQDVLPVARKHSRDHILLFNDAHFLMASLGAHDPQTTQ
ELLTTLRDASESPGENCQHLLARDVGLPLCQALVEAEDGNPDRVLELLLPIRYRIVQLGGSNAQRDVFNQ
LLIHAALNCTSSVHKNVARSLLMERDALKPNSPLTERLIRKAATVHLMQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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