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Report for CCDS81304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81304.1 Public Homo sapiens 1 CAP1 24 110 108 CCDS HistoryNCBI Gene:10487Re-query CCDS DB by CCDS ID:81304.1Re-query CCDS DB by GeneID:10487See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81304.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340450.7 ENSP00000344832.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340450.7Link to Ensembl Protein Viewer:ENSP00000344832.3Re-query CCDS DB by Nucleotide ID:ENST00000340450Re-query CCDS DB by Protein ID:ENSP00000344832
Original member Current member EBI ENST00000372798.5 ENSP00000361884.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372798.5Link to Ensembl Protein Viewer:ENSP00000361884.1Re-query CCDS DB by Nucleotide ID:ENST00000372798Re-query CCDS DB by Protein ID:ENSP00000361884
Original member Current member EBI ENST00000372802.5 ENSP00000361888.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372802.5Link to Ensembl Protein Viewer:ENSP00000361888.1Re-query CCDS DB by Nucleotide ID:ENST00000372802Re-query CCDS DB by Protein ID:ENSP00000361888
Original member Current member NCBI NM_001330502.2 NP_001317431.2 Accepted alive Link to Nucleotide Sequence:NM_001330502.2Link to Protein Sequence:NP_001317431.2Re-query CCDS DB by Nucleotide ID:NM_001330502Re-query CCDS DB by Protein ID:NP_001317431Link to BLAST:NP_001317431.2
Original member Current member NCBI NM_001350482.2 NP_001337411.2 Accepted alive Link to Nucleotide Sequence:NM_001350482.2Link to Protein Sequence:NP_001337411.2Re-query CCDS DB by Nucleotide ID:NM_001350482Re-query CCDS DB by Protein ID:NP_001337411Link to BLAST:NP_001337411.2
Original member Current member NCBI NM_001350483.2 NP_001337412.2 Accepted alive Link to Nucleotide Sequence:NM_001350483.2Link to Protein Sequence:NP_001337412.2Re-query CCDS DB by Nucleotide ID:NM_001350483Re-query CCDS DB by Protein ID:NP_001337412Link to BLAST:NP_001337412.2
Original member Current member NCBI NM_001350484.2 NP_001337413.2 Accepted alive Link to Nucleotide Sequence:NM_001350484.2Link to Protein Sequence:NP_001337413.2Re-query CCDS DB by Nucleotide ID:NM_001350484Re-query CCDS DB by Protein ID:NP_001337413Link to BLAST:NP_001337413.2
Original member Current member NCBI NM_001350485.2 NP_001337414.2 Accepted alive Link to Nucleotide Sequence:NM_001350485.2Link to Protein Sequence:NP_001337414.2Re-query CCDS DB by Nucleotide ID:NM_001350485Re-query CCDS DB by Protein ID:NP_001337414Link to BLAST:NP_001337414.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317431.2 474 Q01518-2 474 100% 0 0
NP_001337411.2 474 Q01518-2 474 100% 0 0
NP_001337412.2 474 Q01518-2 474 100% 0 0
NP_001337413.2 474 Q01518-2 474 100% 0 0
NP_001337414.2 474 Q01518-2 474 100% 0 0

Chromosomal Locations for CCDS 81304.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 40059347 40059458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40060070 40060170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40061735 40061812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40064227 40064370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40064474 40064559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40066215 40066320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40067540 40067717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40069690 40069874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40070159 40070282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40070430 40070512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40070836 40070979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40071450 40071533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGGCTGACATGCAAAATCTGGTAGAAAGATTGGAGAGGGCAGTGGGCCGCCTGGAGGCAGTATCTCATA
CCTCTGACATGCACCGTGGGTATGCAGACAGTCCTTCAAAAGGAGCAGCTCCATATGTGCAGGCATTTGA
CTCGCTGCTTGCTGGTCCTGTGGCAGAGTACTTGAAGATCAGTAAAGAGATTGGGGGAGACGTGCAGAAA
CATGCGGAGATGGTCCACACAGGTTTGAAGTTGGAGCGAGCTCTGTTGGTTACAGCTTCTCAGTGTCAAC
AGCCAGCAGAAAATAAGCTTTCCGATTTGTTGGCACCCATCTCAGAGCAGATCAAAGAAGTGATAACCTT
TCGGGAGAAGAACCGAGGCAGCAAGTTGTTTAATCACCTGTCAGCTGTCAGCGAAAGTATCCAGGCCCTG
GGCTGGGTGGCTATGGCTCCCAAGCCTGGCCCTTATGTGAAAGAAATGAATGATGCCGCCATGTTTTATA
CAAACCGAGTCCTCAAAGAGTACAAAGATGTGGATAAGAAGCATGTAGACTGGGTCAAAGCTTATTTAAG
TATATGGACAGAGCTGCAGGCTTACATTAAGGAGTTCCATACCACCGGACTGGCCTGGAGCAAAACGGGG
CCTGTGGCAAAAGAACTGAGCGGACTGCCATCTGGACCCTCTGCCGGATCATGTCCTCCTCCCCCTCCAC
CATGCCCCCCTCCTCCCCCAGTCTCTACCATTTCATGCTCATATGAGTCTGCTTCCCGCTCATCACTGTT
CGCGCAGATTAATCAGGGGGAGAGCATTACACATGCCCTGAAACATGTATCTGATGACATGAAGACTCAC
AAGAACCCTGCCCTGAAGGCTCAGAGTGGTCCAGTACGCAGTGGCCCCAAACCATTCTCTGCACCTAAAC
CCCAAACCAGCCCATCCCCCAAACGAGCCACAAAGAAGGAGCCAGCTGTACTTGAACTGGAGGGCAAGAA
GTGGAGAGTGGAAAATCAGGAAAATGTTTCCAACCTGGTGATTGAGGACACAGAGCTGAAACAGGTGGCT
TACATATACAAGTGTGTCAACACGACATTGCAAATCAAGGGCAAAATTAACTCCATTACAGTAGATAACT
GTAAGAAACTTGGCCTGGTATTCGATGACGTGGTGGGCATTGTGGAGATAATCAACAGTAAGGATGTCAA
AGTTCAGGTAATGGGTAAAGTGCCAACCATATCCATCAACAAAACAGATGGCTGCCATGCTTACCTGAGC
AAGAATTCCCTGGATTGTGAAATAGTCAGTGCCAAATCTTCCGAGATGAATGTCCTCATTCCTACAGAAG
GCGGTGACTTTAATGAATTCCCAGTTCCTGAGCAGTTCAAGACCCTATGGAACGGGCAGAAGTTGGTCAC
CACAGTGACAGAAATTGCTGGATAA

Translation (474 aa):
MADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKGAAPYVQAFDSLLAGPVAEYLKISKEIGGDVQK
HAEMVHTGLKLERALLVTASQCQQPAENKLSDLLAPISEQIKEVITFREKNRGSKLFNHLSAVSESIQAL
GWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHTTGLAWSKTG
PVAKELSGLPSGPSAGSCPPPPPPCPPPPPVSTISCSYESASRSSLFAQINQGESITHALKHVSDDMKTH
KNPALKAQSGPVRSGPKPFSAPKPQTSPSPKRATKKEPAVLELEGKKWRVENQENVSNLVIEDTELKQVA
YIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLS
KNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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