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Report for CCDS43143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43143.1 Public Homo sapiens 3 SLC12A8 24 110 108 CCDS HistoryNCBI Gene:84561Re-query CCDS DB by CCDS ID:43143.1Re-query CCDS DB by GeneID:84561See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43143.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393469.8 ENSP00000377112.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393469.8Link to Ensembl Protein Viewer:ENSP00000377112.4Re-query CCDS DB by Nucleotide ID:ENST00000393469Re-query CCDS DB by Protein ID:ENSP00000377112
Original member Current member EBI ENST00000469902.6 ENSP00000418783.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000469902.6Link to Ensembl Protein Viewer:ENSP00000418783.1Re-query CCDS DB by Nucleotide ID:ENST00000469902Re-query CCDS DB by Protein ID:ENSP00000418783
Original member Current member NCBI NM_001195483.2 NP_001182412.2 Accepted alive Link to Nucleotide Sequence:NM_001195483.2Link to Protein Sequence:NP_001182412.2Re-query CCDS DB by Nucleotide ID:NM_001195483Re-query CCDS DB by Protein ID:NP_001182412Link to BLAST:NP_001182412.2
Original member Current member NCBI NM_024628.6 NP_078904.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024628.6Link to Protein Sequence:NP_078904.4Re-query CCDS DB by Nucleotide ID:NM_024628Re-query CCDS DB by Protein ID:NP_078904Link to BLAST:NP_078904.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182412.2 714 A0AV02-1 714 100% 0 0
NP_078904.4 714 A0AV02-1 714 100% 0 0

Chromosomal Locations for CCDS 43143.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 125083890 125084052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125088310 125088370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125091439 125091556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125092101 125092198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125107481 125108126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125110189 125110335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125118769 125118856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125120599 125120686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125135669 125135782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125177743 125177974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125187237 125187428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125190375 125190521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125211299 125211349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2145 nt):
ATGACCCAGATGTCCCAGGTGCAGGAGCTCTTCCATGAGGCAGCCCAGCAGGATGCCCTGGCCCAGCCCC
AGCCCTGGTGGAAGACCCAGCTGTTCATGTGGGAGCCTGTGCTGTTTGGGACCTGGGATGGTGTGTTCAC
ATCCTGCATGATCAACATCTTTGGGGTTGTGCTCTTCCTGAGGACTGGCTGGCTGGTGGGAAACACAGGA
GTGCTCCTGGGCATGTTCCTGGTGTCCTTCGTCATCCTGGTGGCCCTCGTCACGGTGCTGTCTGGCATTG
GCGTCGGGGAGCGCAGCAGCATCGGCAGCGGTGGCGTCTACTCCATGATCTCCTCGGTCCTGGGTGGGCA
GACGGGAGGCACCATCGGGCTGCTCTATGTGTTTGGACAGTGTGTTGCAGGTGCCATGTATATCACCGGC
TTTGCTGAATCCATCTCGGATTTGCTGGGCCTCGGGAATATCTGGGCTGTGCGAGGAATTTCAGTTGCGG
TGCTTCTGGCCTTGCTGGGCATTAACCTCGCAGGTGTCAAATGGATAATCCGCCTCCAGCTGCTGTTGCT
GTTCCTGCTGGCCGTGTCCACACTGGACTTTGTGGTGGGTTCTTTCACCCACCTGGACCCAGAACATGGT
TTCATTGGATATTCACCCGAACTGCTACAGAACAACACGCTGCCCGATTACAGCCCGGGGGAATCTTTTT
TCACTGTCTTTGGGGTTTTCTTCCCAGCGGCTACAGGAGTCATGGCCGGCTTCAACATGGGGGGCGACCT
CAGGGAGCCTGCCGCCAGCATTCCCCTGGGCTCCCTGGCAGCTGTTGGCATCTCGTGGTTTCTGTACATC
ATCTTCGTCTTCCTCCTGGGCGCCATCTGCACTCGAGAGGCCCTTCGCTATGACTTCCTGATAGCGGAAA
AGGTATCCCTCATGGGCTTCCTGTTCCTTTTGGGCTTATACATCTCGTCCCTGGCTTCCTGCATGGGAGG
ACTTTATGGAGCTCCCCGCATCCTGCAGTGCATTGCCCAGGAGAAAGTGATCCCTGCACTTGCCTGTCTG
GGACAAGGGAAGGGGCCAAACAAAACACCCGTGGCTGCCATCTGCCTGACCAGCTTGGTGACCATGGCCT
TTGTTTTTGTGGGTCAAGTGAACGTTCTGGCCCCCATCGTCACCATCAACTTCATGCTGACATACGTTGC
AGTGGACTACTCTTACTTCTCCCTGTCCATGTGTTCCTGCAGCCTGACCCCGGTGCCTGAGCCGGTGCTC
AGGGAGGGCGCAGAAGGCCTCCACTGCTCTGAGCACCTGCTCTTAGAGAAAGCTCCCAGTTACGGCTCTG
AGGGACCTGCCCAAAGAGTCTTGGAGGGCACGCTACTGGAATTCACCAAGGACATGGATCAGCTCCTCCA
GCTAACCAGGAAGCTTGAGAGTAGCCAGCCCAGGCAAGGAGAGGGTAACAGGACCCCAGAAAGTCAGAAG
AGGAAAAGCAAGAAGGCCACCAAGCAGACCCTACAAGATAGCTTCCTCTTGGACCTCAAATCCCCTCCTT
CTTTCCCTGTCGAGATCTCTGACAGGTTGCCCGCTGCCTCCTGGGAGGGGCAGGAGTCCTGCTGGAACAA
GCAGACTTCCAAGAGCGAAGGGACTCAGCCTGAGGGAACATATGGAGAGCAACTTGTTCCTGAGCTGTGC
AACCAATCAGAGTCCAGTGGAGAAGATTTCTTCCTGAAGTCCAGGCTCCAAGAACAAGATGTCTGGAGAA
GATCCACTTCTTTCTATACCCACATGTGCAACCCCTGGGTCTCCCTGTTGGGGGCTGTTGGGTCCCTTCT
CATCATGTTTGTGATACAGTGGGTGTATACCCTGGTTAACATGGGTGTTGCTGCCATCGTGTATTTCTAC
ATTGGCCGGGCCAGTCCAGGGCTTCACCTTGGATCAGCCTCCAACTTCAGCTTTTTCCGGTGGATGAGGT
CTCTCTTGCTCCCCTCCTGCAGGAGCTTGCGGTCCCCTCAGGAGCAGATCATCTTGGCGCCGTCCCTGGC
TAAGGTTGACATGGAGATGACTCAGCTCACCCAGGAGAATGCAGACTTCGCCACTCGGGATCGCTACCAC
CACTCCTCCCTCGTGAACCGGGAGCAGCTGATGCCTCACTACTAG

Translation (714 aa):
MTQMSQVQELFHEAAQQDALAQPQPWWKTQLFMWEPVLFGTWDGVFTSCMINIFGVVLFLRTGWLVGNTG
VLLGMFLVSFVILVALVTVLSGIGVGERSSIGSGGVYSMISSVLGGQTGGTIGLLYVFGQCVAGAMYITG
FAESISDLLGLGNIWAVRGISVAVLLALLGINLAGVKWIIRLQLLLLFLLAVSTLDFVVGSFTHLDPEHG
FIGYSPELLQNNTLPDYSPGESFFTVFGVFFPAATGVMAGFNMGGDLREPAASIPLGSLAAVGISWFLYI
IFVFLLGAICTREALRYDFLIAEKVSLMGFLFLLGLYISSLASCMGGLYGAPRILQCIAQEKVIPALACL
GQGKGPNKTPVAAICLTSLVTMAFVFVGQVNVLAPIVTINFMLTYVAVDYSYFSLSMCSCSLTPVPEPVL
REGAEGLHCSEHLLLEKAPSYGSEGPAQRVLEGTLLEFTKDMDQLLQLTRKLESSQPRQGEGNRTPESQK
RKSKKATKQTLQDSFLLDLKSPPSFPVEISDRLPAASWEGQESCWNKQTSKSEGTQPEGTYGEQLVPELC
NQSESSGEDFFLKSRLQEQDVWRRSTSFYTHMCNPWVSLLGAVGSLLIMFVIQWVYTLVNMGVAAIVYFY
IGRASPGLHLGSASNFSFFRWMRSLLLPSCRSLRSPQEQIILAPSLAKVDMEMTQLTQENADFATRDRYH
HSSLVNREQLMPHY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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