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Report for CCDS31451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31451.1 Public Homo sapiens 11 PAX6 24 110 108 CCDS HistoryNCBI Gene:5080Re-query CCDS DB by CCDS ID:31451.1Re-query CCDS DB by GeneID:5080See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31451.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000241001.13 ENSP00000241001.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000241001.13Link to Ensembl Protein Viewer:ENSP00000241001.8Re-query CCDS DB by Nucleotide ID:ENST00000241001Re-query CCDS DB by Protein ID:ENSP00000241001
Original member Current member EBI ENST00000379109.7 ENSP00000368403.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379109.7Link to Ensembl Protein Viewer:ENSP00000368403.2Re-query CCDS DB by Nucleotide ID:ENST00000379109Re-query CCDS DB by Protein ID:ENSP00000368403
Original member Current member EBI ENST00000379132.8 ENSP00000368427.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379132.8Link to Ensembl Protein Viewer:ENSP00000368427.2Re-query CCDS DB by Nucleotide ID:ENST00000379132Re-query CCDS DB by Protein ID:ENSP00000368427
Original member Current member EBI ENST00000639916.1 ENSP00000490963.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639916.1Link to Ensembl Protein Viewer:ENSP00000490963.1Re-query CCDS DB by Nucleotide ID:ENST00000639916Re-query CCDS DB by Protein ID:ENSP00000490963
Original member Current member EBI ENST00000640610.1 ENSP00000491295.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640610.1Link to Ensembl Protein Viewer:ENSP00000491295.1Re-query CCDS DB by Nucleotide ID:ENST00000640610Re-query CCDS DB by Protein ID:ENSP00000491295
Original member Current member EBI ENST00000643871.1 ENSP00000495109.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000643871.1Link to Ensembl Protein Viewer:ENSP00000495109.1Re-query CCDS DB by Nucleotide ID:ENST00000643871Re-query CCDS DB by Protein ID:ENSP00000495109
Original member Current member NCBI NM_000280.6 NP_000271.1 Accepted alive Link to Nucleotide Sequence:NM_000280.6Link to Protein Sequence:NP_000271.1Re-query CCDS DB by Nucleotide ID:NM_000280Re-query CCDS DB by Protein ID:NP_000271Link to BLAST:NP_000271.1
Original member Current member NCBI NM_001127612.3 NP_001121084.1 Accepted alive Link to Nucleotide Sequence:NM_001127612.3Link to Protein Sequence:NP_001121084.1Re-query CCDS DB by Nucleotide ID:NM_001127612Re-query CCDS DB by Protein ID:NP_001121084Link to BLAST:NP_001121084.1
Original member Current member NCBI NM_001258464.2 NP_001245393.1 Accepted alive Link to Nucleotide Sequence:NM_001258464.2Link to Protein Sequence:NP_001245393.1Re-query CCDS DB by Nucleotide ID:NM_001258464Re-query CCDS DB by Protein ID:NP_001245393Link to BLAST:NP_001245393.1
Original member Current member NCBI NM_001258465.3 NP_001245394.1 Accepted alive Link to Nucleotide Sequence:NM_001258465.3Link to Protein Sequence:NP_001245394.1Re-query CCDS DB by Nucleotide ID:NM_001258465Re-query CCDS DB by Protein ID:NP_001245394Link to BLAST:NP_001245394.1
Original member Current member NCBI NM_001368887.2 NP_001355816.1 Accepted alive Link to Nucleotide Sequence:NM_001368887.2Link to Protein Sequence:NP_001355816.1Re-query CCDS DB by Nucleotide ID:NM_001368887Re-query CCDS DB by Protein ID:NP_001355816Link to BLAST:NP_001355816.1
Original member Current member NCBI NM_001368888.2 NP_001355817.1 Accepted alive Link to Nucleotide Sequence:NM_001368888.2Link to Protein Sequence:NP_001355817.1Re-query CCDS DB by Nucleotide ID:NM_001368888Re-query CCDS DB by Protein ID:NP_001355817Link to BLAST:NP_001355817.1
Original member Current member NCBI NM_001368889.2 NP_001355818.1 Accepted alive Link to Nucleotide Sequence:NM_001368889.2Link to Protein Sequence:NP_001355818.1Re-query CCDS DB by Nucleotide ID:NM_001368889Re-query CCDS DB by Protein ID:NP_001355818Link to BLAST:NP_001355818.1
Original member Current member NCBI NM_001368890.2 NP_001355819.1 Accepted alive Link to Nucleotide Sequence:NM_001368890.2Link to Protein Sequence:NP_001355819.1Re-query CCDS DB by Nucleotide ID:NM_001368890Re-query CCDS DB by Protein ID:NP_001355819Link to BLAST:NP_001355819.1
Original member Current member NCBI NM_001368891.2 NP_001355820.1 Accepted alive Link to Nucleotide Sequence:NM_001368891.2Link to Protein Sequence:NP_001355820.1Re-query CCDS DB by Nucleotide ID:NM_001368891Re-query CCDS DB by Protein ID:NP_001355820Link to BLAST:NP_001355820.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000271.1 422 P26367-1 422 100% 0 0
NP_001121084.1 422 P26367-1 422 100% 0 0
NP_001245393.1 422 P26367-1 422 100% 0 0
NP_001245394.1 422 P26367-1 422 100% 0 0
NP_001355816.1 422 P26367-1 422 100% 0 0
NP_001355817.1 422 P26367-1 422 100% 0 0
NP_001355818.1 422 P26367-1 422 100% 0 0
NP_001355819.1 422 P26367-1 422 100% 0 0
NP_001355820.1 422 P26367-1 422 100% 0 0

Chromosomal Locations for CCDS 31451.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 31789934 31790019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31790710 31790860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31793438 31793553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31793652 31793802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31794032 31794114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31794630 31794788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31800691 31800856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31801561 31801776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31802704 31802834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31806402 31806411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGCAGAACAGTCACAGCGGAGTGAATCAGCTCGGTGGTGTCTTTGTCAACGGGCGGCCACTGCCGGACT
CCACCCGGCAGAAGATTGTAGAGCTAGCTCACAGCGGGGCCCGGCCGTGCGACATTTCCCGAATTCTGCA
GGTGTCCAACGGATGTGTGAGTAAAATTCTGGGCAGGTATTACGAGACTGGCTCCATCAGACCCAGGGCA
ATCGGTGGTAGTAAACCGAGAGTAGCGACTCCAGAAGTTGTAAGCAAAATAGCCCAGTATAAGCGGGAGT
GCCCGTCCATCTTTGCTTGGGAAATCCGAGACAGATTACTGTCCGAGGGGGTCTGTACCAACGATAACAT
ACCAAGCGTGTCATCAATAAACAGAGTTCTTCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGAC
GGCATGTATGATAAACTAAGGATGTTGAACGGGCAGACCGGAAGCTGGGGCACCCGCCCTGGTTGGTATC
CGGGGACTTCGGTGCCAGGGCAACCTACGCAAGATGGCTGCCAGCAACAGGAAGGAGGGGGAGAGAATAC
CAACTCCATCAGTTCCAACGGAGAAGATTCAGATGAGGCTCAAATGCGACTTCAGCTGAAGCGGAAGCTG
CAAAGAAATAGAACATCCTTTACCCAAGAGCAAATTGAGGCCCTGGAGAAAGAGTTTGAGAGAACCCATT
ATCCAGATGTGTTTGCCCGAGAAAGACTAGCAGCCAAAATAGATCTACCTGAAGCAAGAATACAGGTATG
GTTTTCTAATCGAAGGGCCAAATGGAGAAGAGAAGAAAAACTGAGGAATCAGAGAAGACAGGCCAGCAAC
ACACCTAGTCATATTCCTATCAGCAGTAGTTTCAGCACCAGTGTCTACCAACCAATTCCACAACCCACCA
CACCGGTTTCCTCCTTCACATCTGGCTCCATGTTGGGCCGAACAGACACAGCCCTCACAAACACCTACAG
CGCTCTGCCGCCTATGCCCAGCTTCACCATGGCAAATAACCTGCCTATGCAACCCCCAGTCCCCAGCCAG
ACCTCCTCATACTCCTGCATGCTGCCCACCAGCCCTTCGGTGAATGGGCGGAGTTATGATACCTACACCC
CCCCACATATGCAGACACACATGAACAGTCAGCCAATGGGCACCTCGGGCACCACTTCAACAGGACTCAT
TTCCCCTGGTGTGTCAGTTCCAGTTCAAGTTCCCGGAAGTGAACCTGATATGTCTCAATACTGGCCAAGA
TTACAGTAA

Translation (422 aa):
MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRA
IGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGAD
GMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKL
QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASN
TPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQ
TSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPR
LQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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