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Report for CCDS86189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86189.1 Public Homo sapiens 11 PAX6 24 110 108 CCDS HistoryNCBI Gene:5080Re-query CCDS DB by CCDS ID:86189.1Re-query CCDS DB by GeneID:5080See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86189.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000638629.1 ENSP00000490971.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638629.1Link to Ensembl Protein Viewer:ENSP00000490971.1Re-query CCDS DB by Nucleotide ID:ENST00000638629Re-query CCDS DB by Protein ID:ENSP00000490971
Original member Current member EBI ENST00000639548.1 ENSP00000491944.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639548.1Link to Ensembl Protein Viewer:ENSP00000491944.1Re-query CCDS DB by Nucleotide ID:ENST00000639548Re-query CCDS DB by Protein ID:ENSP00000491944
Original member Current member EBI ENST00000640125.1 ENSP00000492166.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640125.1Link to Ensembl Protein Viewer:ENSP00000492166.1Re-query CCDS DB by Nucleotide ID:ENST00000640125Re-query CCDS DB by Protein ID:ENSP00000492166
Original member Current member EBI ENST00000481563.6 ENSP00000492205.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000481563.6Link to Ensembl Protein Viewer:ENSP00000492205.1Re-query CCDS DB by Nucleotide ID:ENST00000481563Re-query CCDS DB by Protein ID:ENSP00000492205
Original member Current member EBI ENST00000639386.2 ENSP00000492658.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639386.2Link to Ensembl Protein Viewer:ENSP00000492658.1Re-query CCDS DB by Nucleotide ID:ENST00000639386Re-query CCDS DB by Protein ID:ENSP00000492658
Original member Current member NCBI NM_001310160.2 NP_001297089.1 Accepted alive Link to Nucleotide Sequence:NM_001310160.2Link to Protein Sequence:NP_001297089.1Re-query CCDS DB by Nucleotide ID:NM_001310160Re-query CCDS DB by Protein ID:NP_001297089Link to BLAST:NP_001297089.1
Original member Current member NCBI NM_001310161.3 NP_001297090.1 Accepted alive Link to Nucleotide Sequence:NM_001310161.3Link to Protein Sequence:NP_001297090.1Re-query CCDS DB by Nucleotide ID:NM_001310161Re-query CCDS DB by Protein ID:NP_001297090Link to BLAST:NP_001297090.1
Original member Current member NCBI NM_001368899.2 NP_001355828.1 Accepted alive Link to Nucleotide Sequence:NM_001368899.2Link to Protein Sequence:NP_001355828.1Re-query CCDS DB by Nucleotide ID:NM_001368899Re-query CCDS DB by Protein ID:NP_001355828Link to BLAST:NP_001355828.1
Original member Current member NCBI NM_001368900.2 NP_001355829.1 Accepted alive Link to Nucleotide Sequence:NM_001368900.2Link to Protein Sequence:NP_001355829.1Re-query CCDS DB by Nucleotide ID:NM_001368900Re-query CCDS DB by Protein ID:NP_001355829Link to BLAST:NP_001355829.1
Original member Current member NCBI NM_001368901.2 NP_001355830.1 Accepted alive Link to Nucleotide Sequence:NM_001368901.2Link to Protein Sequence:NP_001355830.1Re-query CCDS DB by Nucleotide ID:NM_001368901Re-query CCDS DB by Protein ID:NP_001355830Link to BLAST:NP_001355830.1
Original member Current member NCBI NM_001368902.2 NP_001355831.1 Accepted alive Link to Nucleotide Sequence:NM_001368902.2Link to Protein Sequence:NP_001355831.1Re-query CCDS DB by Nucleotide ID:NM_001368902Re-query CCDS DB by Protein ID:NP_001355831Link to BLAST:NP_001355831.1
Original member Current member NCBI NM_001368903.2 NP_001355832.1 Accepted alive Link to Nucleotide Sequence:NM_001368903.2Link to Protein Sequence:NP_001355832.1Re-query CCDS DB by Nucleotide ID:NM_001368903Re-query CCDS DB by Protein ID:NP_001355832Link to BLAST:NP_001355832.1
Original member Current member NCBI NM_001368904.2 NP_001355833.1 Accepted alive Link to Nucleotide Sequence:NM_001368904.2Link to Protein Sequence:NP_001355833.1Re-query CCDS DB by Nucleotide ID:NM_001368904Re-query CCDS DB by Protein ID:NP_001355833Link to BLAST:NP_001355833.1
Original member Current member NCBI NM_001368905.2 NP_001355834.1 Accepted alive Link to Nucleotide Sequence:NM_001368905.2Link to Protein Sequence:NP_001355834.1Re-query CCDS DB by Nucleotide ID:NM_001368905Re-query CCDS DB by Protein ID:NP_001355834Link to BLAST:NP_001355834.1
Original member Current member NCBI NM_001368906.2 NP_001355835.1 Accepted alive Link to Nucleotide Sequence:NM_001368906.2Link to Protein Sequence:NP_001355835.1Re-query CCDS DB by Nucleotide ID:NM_001368906Re-query CCDS DB by Protein ID:NP_001355835Link to BLAST:NP_001355835.1
Original member Current member NCBI NM_001368907.2 NP_001355836.1 Accepted alive Link to Nucleotide Sequence:NM_001368907.2Link to Protein Sequence:NP_001355836.1Re-query CCDS DB by Nucleotide ID:NM_001368907Re-query CCDS DB by Protein ID:NP_001355836Link to BLAST:NP_001355836.1
Original member Current member NCBI NM_001368908.2 NP_001355837.1 Accepted alive Link to Nucleotide Sequence:NM_001368908.2Link to Protein Sequence:NP_001355837.1Re-query CCDS DB by Nucleotide ID:NM_001368908Re-query CCDS DB by Protein ID:NP_001355837Link to BLAST:NP_001355837.1
Original member Current member NCBI NM_001368909.2 NP_001355838.1 Accepted alive Link to Nucleotide Sequence:NM_001368909.2Link to Protein Sequence:NP_001355838.1Re-query CCDS DB by Nucleotide ID:NM_001368909Re-query CCDS DB by Protein ID:NP_001355838Link to BLAST:NP_001355838.1

Chromosomal Locations for CCDS 86189.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 31789934 31790019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31790710 31790860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31793438 31793553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31793652 31793802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31794032 31794114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31794630 31794788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31800691 31800805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGGGCGCAGACGGCATGTATGATAAACTAAGGATGTTGAACGGGCAGACCGGAAGCTGGGGCACCCGCC
CTGGTTGGTATCCGGGGACTTCGGTGCCAGGGCAACCTACGCAAGATGGCTGCCAGCAACAGGAAGGAGG
GGGAGAGAATACCAACTCCATCAGTTCCAACGGAGAAGATTCAGATGAGGCTCAAATGCGACTTCAGCTG
AAGCGGAAGCTGCAAAGAAATAGAACATCCTTTACCCAAGAGCAAATTGAGGCCCTGGAGAAAGAGTTTG
AGAGAACCCATTATCCAGATGTGTTTGCCCGAGAAAGACTAGCAGCCAAAATAGATCTACCTGAAGCAAG
AATACAGGTATGGTTTTCTAATCGAAGGGCCAAATGGAGAAGAGAAGAAAAACTGAGGAATCAGAGAAGA
CAGGCCAGCAACACACCTAGTCATATTCCTATCAGCAGTAGTTTCAGCACCAGTGTCTACCAACCAATTC
CACAACCCACCACACCGGTTTCCTCCTTCACATCTGGCTCCATGTTGGGCCGAACAGACACAGCCCTCAC
AAACACCTACAGCGCTCTGCCGCCTATGCCCAGCTTCACCATGGCAAATAACCTGCCTATGCAACCCCCA
GTCCCCAGCCAGACCTCCTCATACTCCTGCATGCTGCCCACCAGCCCTTCGGTGAATGGGCGGAGTTATG
ATACCTACACCCCCCCACATATGCAGACACACATGAACAGTCAGCCAATGGGCACCTCGGGCACCACTTC
AACAGGACTCATTTCCCCTGGTGTGTCAGTTCCAGTTCAAGTTCCCGGAAGTGAACCTGATATGTCTCAA
TACTGGCCAAGATTACAGTAA

Translation (286 aa):
MGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQL
KRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRR
QASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPP
VPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQ
YWPRLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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