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Report for CCDS45617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45617.1 Public Homo sapiens 17 TVP23C 24 110 108 CCDS HistoryNCBI Gene:201158Re-query CCDS DB by CCDS ID:45617.1Re-query CCDS DB by GeneID:201158See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45617.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000518321.6 ENSP00000464052.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000518321.6Link to Ensembl Protein Viewer:ENSP00000464052.1Re-query CCDS DB by Nucleotide ID:ENST00000518321Re-query CCDS DB by Protein ID:ENSP00000464052
Original member Current member NCBI NM_001135036.2 NP_001128508.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001135036.2Link to Protein Sequence:NP_001128508.1Re-query CCDS DB by Nucleotide ID:NM_001135036Re-query CCDS DB by Protein ID:NP_001128508Link to BLAST:NP_001128508.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128508.1 203 Q96ET8-3 203 100% 0 0

Chromosomal Locations for CCDS 45617.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15540412 15540561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15545785 15545916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15547059 15547148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15553685 15553829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15555282 15555364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15563437 15563448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGTTGCAGCAGGATAGTAATGATGACACTGAAGATGTTTCACTGTTTGATGCGGAAGAGGAGACGACTA
ATAGACCAAGAAAAGCCAAAATCAGACATCCAGTAGCATCGTTTTTCCACTTATTCTTTCGAGTCAGTGC
AATCATCGTCTGTCTTCTCTGTGAGTTGCTCAGCAGCAGCTTTATTACCTGTATGGTTACAATTATCTTG
TTGTTGTCGTGTGACTTTTGGGCAGTGAAGAATGTCACAGGTAGACTAATGGTTGGCCTACGTTGGTGGA
ATCACATTGATGAAGATGGAAAGAGCCATTGGGTGTTTGAATCTAGAAAGGAGTCCTCTCAAGAGAATAA
AACTGTGTCAGAGGCTGAATCAAGAATCTTTTGGTTGGGACTTATTGCCTGTTCAGTACTGTGGGTGATA
TTTGCCTTTAGTGCACTCTTCTCCTTCACAGTAAAGTGGCTGGCGGTGGTTATTATGGGTGTGGTGCTAC
AAGGTGCCAACCTGTATGGTTACATCAGGTGTAAGGTGCGCAGCAGAAAGCATTTAACCAGCATGGCTAC
TTCATATTTTGGAAAGCAGTTTTTAAGACAAGTAAGTGTTTTCTGGATGTGA

Translation (203 aa):
MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSSFITCMVTIIL
LLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACSVLWVI
FAFSALFSFTVKWLAVVIMGVVLQGANLYGYIRCKVRSRKHLTSMATSYFGKQFLRQVSVFWM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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