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Report for CCDS46568.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46568.1 Public Homo sapiens 20 RAD21L1 24 110 108 CCDS HistoryNCBI Gene:642636Re-query CCDS DB by CCDS ID:46568.1Re-query CCDS DB by GeneID:642636See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46568.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409241.5 ENSP00000386414.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409241.5Link to Ensembl Protein Viewer:ENSP00000386414.1Re-query CCDS DB by Nucleotide ID:ENST00000409241Re-query CCDS DB by Protein ID:ENSP00000386414
Original member Current member NCBI NM_001136566.3 NP_001130038.2 Accepted alive Link to Nucleotide Sequence:NM_001136566.3Link to Protein Sequence:NP_001130038.2Re-query CCDS DB by Nucleotide ID:NM_001136566Re-query CCDS DB by Protein ID:NP_001130038Link to BLAST:NP_001130038.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001130038.2 556 Q9H4I0-1 556 100% 0 0

Chromosomal Locations for CCDS 46568.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 1228454 1228597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1229880 1230009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1231526 1231619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1234085 1234191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1238044 1238214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1239312 1239407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1240321 1240434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1242619 1242845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1243097 1243196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1244046 1244170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1246210 1246305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1248626 1248703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1254269 1254457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGTTCTACACACATGTGCTTATGAGTAAACGAGGGCCATTGGCCAAAATATGGCTTGCAGCTCACTGGG
AGAAGAAACTCACAAAGGCCCATGTATTTGAATGTAATCTAGAGATAACCATTGAAAAAATTCTTTCACC
CAAGGTGAAAATAGCACTTCGAACTTCAGGACACCTTCTTTTGGGAGTTGTTCGAATCTATAACAGGAAG
GCAAAATATCTTTTGGCAGATTGCAGTGAAGCATTTCTTAAAATGAAGATGACATTTTGCCCAGGACTGG
TTGACCTTCCAAAAGAGAATTTTGAAGCATCTTACAATGCTATCACATTGCCAGAAGAATTTCATGATTT
TGACACCCAAAATATGAATGCTATTGATGTTTCAGAACACTTTACTCAGAACCAAAGCAGACCAGAAGAA
ATCACTCTTAGAGAAAATTTTGACAATGATCTAATTTTCCAAGCTGAGAGCTTTGGGGAGGAATCTGAAA
TTCTCAGAAGACATAGCTTCTTTGATGACAACATATTACTGAATTCCAGTGGTCCTTTAATTGAACATAG
TTCTGGAAGCCTCACTGGAGAACGATCTCTATTCTATGACAGTGGAGATGGGTTTGGAGATGAAGGAGCT
GCAGGAGAAATGATTGACAATCTATTGCAAGATGATCAGAATATCCTGTTAGAAGACATGCATTTGAACA
GAGAAATTTCCCTGCCTTCTGAGCCTCCCAATAGTTTAGCAGTTGAACCAGATAACTCAGAGTGTATATG
TGTACCTGAAAATGAAAAAATGAATGAAACAATATTATTATCAACTGAAGAGGAAGGATTTACCCTTGAT
CCAATTGATATTTCAGACATTGCTGAGAAAAGGAAAGGCAAAAAGAGGAGATTGCTCATAGATCCTATCA
AGGAGCTCAGTAGCAAAGTTATACATAAACAGCTTACTTCCTTTGCGGACACACTCATGGTTTTGGAACT
TGCACCTCCTACCCAAAGATTGATGATGTGGAAGAAGAGGGGAGGAGTGCATACACTTCTGTCAACTGCT
GCCCAGGATTTGATTCATGCTGAACTGAAAATGTTGTTTACAAAATGCTTTCTGTCCTCTGGCTTTAAAC
TTGGAAGAAAAATGATACAGAAGGAGTCAGTAAGGGAAGAAGTGGGAAACCAAAATATAGTAGAGACATC
CATGATGCAAGAGCCAAATTACCAGCAAGAGTTAAGTAAACCCCAAACTTGGAAGGATGTGATTGGTGGA
TCTCAGCATAGCTCTCATGAGGATACCAATAAAAATATTAACTCTGAGCAGGATATTGTTGAAATGGTGT
CTTTAGCTGCTGAGGAATCATCTTTAATGAATGACTTATTTGCACAAGAAATTGAATATAGTCCAGTTGA
ATTGGAGTCATTGAGCAATGAAGAAAATATTGAGACAGAGAGATGGAATGGAAGAATACTTCAGATGTTA
AATCGTTTACGGGAATCTAACAAGATGGGAATGCAGTCCTTTAGTCTGATGAAGCTCTGTAGAAATAGTG
ACCGAAAACAAGCAGCTGCCAAATTTTATAGCTTTCTTGTCCTAAAGAAACAGCTGGCTATTGAGCTGAG
CCAGAGTGCTCCCTATGCAGATATTATAGCTACGATGGGACCAATGTTTTATAACATATGA

Translation (556 aa):
MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLLLGVVRIYNRK
AKYLLADCSEAFLKMKMTFCPGLVDLPKENFEASYNAITLPEEFHDFDTQNMNAIDVSEHFTQNQSRPEE
ITLRENFDNDLIFQAESFGEESEILRRHSFFDDNILLNSSGPLIEHSSGSLTGERSLFYDSGDGFGDEGA
AGEMIDNLLQDDQNILLEDMHLNREISLPSEPPNSLAVEPDNSECICVPENEKMNETILLSTEEEGFTLD
PIDISDIAEKRKGKKRRLLIDPIKELSSKVIHKQLTSFADTLMVLELAPPTQRLMMWKKRGGVHTLLSTA
AQDLIHAELKMLFTKCFLSSGFKLGRKMIQKESVREEVGNQNIVETSMMQEPNYQQELSKPQTWKDVIGG
SQHSSHEDTNKNINSEQDIVEMVSLAAEESSLMNDLFAQEIEYSPVELESLSNEENIETERWNGRILQML
NRLRESNKMGMQSFSLMKLCRNSDRKQAAAKFYSFLVLKKQLAIELSQSAPYADIIATMGPMFYNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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