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Report for CCDS7711.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7711.2 Public Homo sapiens 11 TMEM80 24 110 108 CCDS HistoryNCBI Gene:283232Re-query CCDS DB by CCDS ID:7711.2Re-query CCDS DB by GeneID:283232See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 7711.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397512.8 ENSP00000380648.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397512.8Link to Ensembl Protein Viewer:ENSP00000380648.4Re-query CCDS DB by Nucleotide ID:ENST00000397512Re-query CCDS DB by Protein ID:ENSP00000380648
Original member Current member NCBI NM_174940.4 NP_777600.4 Accepted alive Link to Nucleotide Sequence:NM_174940.4Link to Protein Sequence:NP_777600.4Re-query CCDS DB by Nucleotide ID:NM_174940Re-query CCDS DB by Protein ID:NP_777600Link to BLAST:NP_777600.4

Chromosomal Locations for CCDS 7711.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 700163 700235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 700615 700707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 702945 703150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGCTGTTTTATCTCAGCGGAACGTACTACGCCCTGTATTTCCTCGCCACGCTCCTGATGATCACGTATA
AAAGTCAGGTGTTCAGCTATCCTCACCGCTACCTGGTCCTCGATCTTGCTCTGCTGTTTCTGATGGGGAT
TCTAGAAGCAGTTCGGTTATACCTGGGCACCAGGGGCAACCTGACAGAGGCTGAGAGGCCGCTGGCCGCC
AGCCTGGCCCTCACGGCTGGCACCGCCCTCCTCTCTGCCCACTTCCTGCTTTGGCAGGCCCTAGTGTTGT
GGGCGGACTGGGCCCTCAGCGCCACGCTCCTGGCCCTTCACGGCCTGGAGGCCGTCCTGCAGGTGGTTGC
CATCGCGGCCTTCACCAGGTAG

Translation (123 aa):
MLFYLSGTYYALYFLATLLMITYKSQVFSYPHRYLVLDLALLFLMGILEAVRLYLGTRGNLTEAERPLAA
SLALTAGTALLSAHFLLWQALVLWADWALSATLLALHGLEAVLQVVAIAAFTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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