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Report for CCDS33020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33020.1 Public Homo sapiens 19 SAMD4B 24 110 108 CCDS HistoryNCBI Gene:55095Re-query CCDS DB by CCDS ID:33020.1Re-query CCDS DB by GeneID:55095See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33020.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314471.10 ENSP00000317224.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000314471.10Link to Ensembl Protein Viewer:ENSP00000317224.5Re-query CCDS DB by Nucleotide ID:ENST00000314471Re-query CCDS DB by Protein ID:ENSP00000317224
Original member Current member EBI ENST00000610417.5 ENSP00000484229.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000610417.5Link to Ensembl Protein Viewer:ENSP00000484229.1Re-query CCDS DB by Nucleotide ID:ENST00000610417Re-query CCDS DB by Protein ID:ENSP00000484229
Original member Current member NCBI NM_001384565.1 NP_001371494.1 Accepted alive Link to Nucleotide Sequence:NM_001384565.1Link to Protein Sequence:NP_001371494.1Re-query CCDS DB by Nucleotide ID:NM_001384565Re-query CCDS DB by Protein ID:NP_001371494Link to BLAST:NP_001371494.1
Original member Current member NCBI NM_001384566.1 NP_001371495.1 Accepted alive Link to Nucleotide Sequence:NM_001384566.1Link to Protein Sequence:NP_001371495.1Re-query CCDS DB by Nucleotide ID:NM_001384566Re-query CCDS DB by Protein ID:NP_001371495Link to BLAST:NP_001371495.1
Original member Current member NCBI NM_001384568.1 NP_001371497.1 Accepted alive Link to Nucleotide Sequence:NM_001384568.1Link to Protein Sequence:NP_001371497.1Re-query CCDS DB by Nucleotide ID:NM_001384568Re-query CCDS DB by Protein ID:NP_001371497Link to BLAST:NP_001371497.1
Original member Current member NCBI NM_001384569.1 NP_001371498.1 Accepted alive Link to Nucleotide Sequence:NM_001384569.1Link to Protein Sequence:NP_001371498.1Re-query CCDS DB by Nucleotide ID:NM_001384569Re-query CCDS DB by Protein ID:NP_001371498Link to BLAST:NP_001371498.1
Original member Current member NCBI NM_001384570.1 NP_001371499.1 Accepted alive Link to Nucleotide Sequence:NM_001384570.1Link to Protein Sequence:NP_001371499.1Re-query CCDS DB by Nucleotide ID:NM_001384570Re-query CCDS DB by Protein ID:NP_001371499Link to BLAST:NP_001371499.1
Original member Current member NCBI NM_001384571.1 NP_001371500.1 Accepted alive Link to Nucleotide Sequence:NM_001384571.1Link to Protein Sequence:NP_001371500.1Re-query CCDS DB by Nucleotide ID:NM_001384571Re-query CCDS DB by Protein ID:NP_001371500Link to BLAST:NP_001371500.1
Original member Current member NCBI NM_001384573.1 NP_001371502.1 Accepted alive Link to Nucleotide Sequence:NM_001384573.1Link to Protein Sequence:NP_001371502.1Re-query CCDS DB by Nucleotide ID:NM_001384573Re-query CCDS DB by Protein ID:NP_001371502Link to BLAST:NP_001371502.1
Original member Current member NCBI NM_001384574.2 NP_001371503.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384574.2Link to Protein Sequence:NP_001371503.1Re-query CCDS DB by Nucleotide ID:NM_001384574Re-query CCDS DB by Protein ID:NP_001371503Link to BLAST:NP_001371503.1
Original member Current member NCBI NM_001384575.1 NP_001371504.1 Accepted alive Link to Nucleotide Sequence:NM_001384575.1Link to Protein Sequence:NP_001371504.1Re-query CCDS DB by Nucleotide ID:NM_001384575Re-query CCDS DB by Protein ID:NP_001371504Link to BLAST:NP_001371504.1
Original member Current member NCBI NM_001384576.1 NP_001371505.1 Accepted alive Link to Nucleotide Sequence:NM_001384576.1Link to Protein Sequence:NP_001371505.1Re-query CCDS DB by Nucleotide ID:NM_001384576Re-query CCDS DB by Protein ID:NP_001371505Link to BLAST:NP_001371505.1
Original member Current member NCBI NM_001384577.1 NP_001371506.1 Accepted alive Link to Nucleotide Sequence:NM_001384577.1Link to Protein Sequence:NP_001371506.1Re-query CCDS DB by Nucleotide ID:NM_001384577Re-query CCDS DB by Protein ID:NP_001371506Link to BLAST:NP_001371506.1
Original member Current member NCBI NM_001384578.1 NP_001371507.1 Accepted alive Link to Nucleotide Sequence:NM_001384578.1Link to Protein Sequence:NP_001371507.1Re-query CCDS DB by Nucleotide ID:NM_001384578Re-query CCDS DB by Protein ID:NP_001371507Link to BLAST:NP_001371507.1
Original member Current member NCBI NM_018028.4 NP_060498.2 Accepted alive Link to Nucleotide Sequence:NM_018028.4Link to Protein Sequence:NP_060498.2Re-query CCDS DB by Nucleotide ID:NM_018028Re-query CCDS DB by Protein ID:NP_060498Link to BLAST:NP_060498.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371494.1 694 Q5PRF9 694 100% 0 0
NP_001371495.1 694 Q5PRF9 694 100% 0 0
NP_001371497.1 694 Q5PRF9 694 100% 0 0
NP_001371498.1 694 Q5PRF9 694 100% 0 0
NP_001371499.1 694 Q5PRF9 694 100% 0 0
NP_001371500.1 694 Q5PRF9 694 100% 0 0
NP_001371502.1 694 Q5PRF9 694 100% 0 0
NP_001371503.1 694 Q5PRF9 694 100% 0 0
NP_001371504.1 694 Q5PRF9 694 100% 0 0
NP_001371505.1 694 Q5PRF9 694 100% 0 0
NP_001371506.1 694 Q5PRF9 694 100% 0 0
NP_001371507.1 694 Q5PRF9 694 100% 0 0
NP_060498.2 694 Q5PRF9 694 100% 0 0

Chromosomal Locations for CCDS 33020.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 39356894 39357089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39369655 39370125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39375650 39375889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39376437 39376546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39376705 39376791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39377485 39377824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39378504 39378589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39379966 39380084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39380587 39380785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39380990 39381113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39383208 39383291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39383499 39383527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2085 nt):
ATGATGTTCCGAGACCAGGTGGGCATCCTCGCTGGCTGGTTCAAAGGCTGGAATGAGTGTGAGCAGACAG
TGGCCCTCCTGTCACTTCTGAAACGGGTCACCCGTACCCAGGCCCGCTTCCTGCAGCTCTGCCTGGAGCA
CTCACTGGCGGACTGCAATGACATCCACCTGCTGGAGTCGGAGGCCAACAGTGCTGCCATCGTCAGCCAG
TGGCAGCAGGAGTCCAAAGAGAAGGTGGTGTCCCTCCTGCTGTCCCACCTTCCCCTGCTTCAGCCAGGCA
ACACAGAGGCCAAGTCGGAGTACATGAGGCTACTGCAGAAAGTGCTGGCCTACTCAATCGAGAGCAATGC
TTTCATCGAGGAGAGTCGCCAGCTGCTTTCCTATGCCCTCATCCACCCAGCCACCACACTGGAGGACCGC
AACGCACTGGCCCTCTGGCTGAGCCACCTGGAAGAGCGGTTGGCTAGTGGCTTCCGCTCCCGGCCAGAGC
CCTCCTACCATTCACGTCAAGGCTCAGATGAGTGGGGGGGCCCTGCAGAGCTAGGCCCTGGGGAGGCAGG
GCCAGGCTGGCAGGACAAGCCACCCCGGGAAAATGGACACGTGCCCTTCCACCCATCCAGCTCAGTGCCG
CCAGCCATCAACAGTATTGGGAGCAATGCAAACACAGGTCTCCCCTGCCAAATCCACCCTAGCCCACTGA
AGCGCTCCATGTCACTCATCCCTACAAGCCCCCAGGTCCCTGGTGAGTGGCCGAGTCCAGAGGAGCTTGG
GGCCCGGGCTGCTTTTACCACGCCCGATCACGCACCTCTCTCGCCCCAGAGCAGCGTGGCCTCCTCTGGC
AGTGAGCAGACAGAGGAGCAGGGCTCCAGCCGGAACACCTTCCAGGAGGATGGCAGTGGCATGAAAGATG
TGCCCTCATGGCTCAAGAGCCTCCGTTTGCACAAGTATGCAGCCCTCTTCTCACAGATGAGCTACGAGGA
GATGATGACACTGACTGAGCAGCACCTGGAGTCTCAGAACGTCACCAAAGGTGCCCGCCACAAGATAGCC
CTGAGCATCCAGAAGCTGCGTGAGAGACAGAGCGTCCTCAAGTCCCTAGAGAAGGATGTGCTGGAAGGCG
GGAACCTACGAAACGCTCTGCAGGAGCTGCAGCAGATCATCATCACTCCCATCAAGGCCTACAGTGTCCT
CCAGGCCACCGTGGCTGCCGCCACCACCACCCCTACTGCCAAGGATGGGGCCCCGGGGGAACCACCGCTG
CCAGGTGCTGAGCCTCCCCTAGCCCACCCCGGCACAGACAAAGGCACCGAGGCCAAGGACCCTCCAGCTG
TGGAGAACTACCCACCTCCACCAGCTCCAGCTCCCACTGATGGCAGTGAGCCTGCCCCGGCTCCCGTCGC
CGACGGAGACATCCCCAGCCAGTTTACACGGGTGATGGGCAAAGTGTGCACCCAACTGCTGGTGTCCCGA
CCAGACGAGGAGAACATCACCAGTTACCTCCAGCTCATCGAAAAGTGCCTGACTCATGAGGCTTTCACGG
AGACGCAGAAGAAACGGCTGCTATCCTGGAAACAGCAAGTGCTGAAGCTCCTCCGGACATTCCCGCGCAA
AGCCGCACTAGAGATGCAGAACTACCGGCAGCAGAAAGGCTGGGCATTCGGCTCCAACTCGCTCCCCATA
GCTGGCTCTGTGGGGATGGGAGTGGCCCGGCGTACCCAGCGGCAGTTCCCAATGCCTCCCCGGGCCCTCC
CACCCGGCCGGATGGGCCTCCTGAGCCCCTCGGGCATTGGGGGTGTCTCCCCTCGACATGCCCTCACCAG
CCCCAGCCTTGGAGGCCAGGGCCGACAGAACCTGTGGTTTGCCAACCCTGGAGGCAGCAACAGCATGCCC
AGTCAGAGCCGCAGCTCTGTGCAGCGCACCCACTCGCTCCCGGTCCACTCGTCACCCCAGGCCATTCTCA
TGTTCCCTCCAGACTGCCCGGTTCCTGGGCCTGACCTGGAGATCAATCCCACTCTGGAGTCTCTGTGTCT
GAGCATGACAGAACACGCCTTGGGTGATGGGACAGACAAAACCTCCACCATCTGA

Translation (694 aa):
MMFRDQVGILAGWFKGWNECEQTVALLSLLKRVTRTQARFLQLCLEHSLADCNDIHLLESEANSAAIVSQ
WQQESKEKVVSLLLSHLPLLQPGNTEAKSEYMRLLQKVLAYSIESNAFIEESRQLLSYALIHPATTLEDR
NALALWLSHLEERLASGFRSRPEPSYHSRQGSDEWGGPAELGPGEAGPGWQDKPPRENGHVPFHPSSSVP
PAINSIGSNANTGLPCQIHPSPLKRSMSLIPTSPQVPGEWPSPEELGARAAFTTPDHAPLSPQSSVASSG
SEQTEEQGSSRNTFQEDGSGMKDVPSWLKSLRLHKYAALFSQMSYEEMMTLTEQHLESQNVTKGARHKIA
LSIQKLRERQSVLKSLEKDVLEGGNLRNALQELQQIIITPIKAYSVLQATVAAATTTPTAKDGAPGEPPL
PGAEPPLAHPGTDKGTEAKDPPAVENYPPPPAPAPTDGSEPAPAPVADGDIPSQFTRVMGKVCTQLLVSR
PDEENITSYLQLIEKCLTHEAFTETQKKRLLSWKQQVLKLLRTFPRKAALEMQNYRQQKGWAFGSNSLPI
AGSVGMGVARRTQRQFPMPPRALPPGRMGLLSPSGIGGVSPRHALTSPSLGGQGRQNLWFANPGGSNSMP
SQSRSSVQRTHSLPVHSSPQAILMFPPDCPVPGPDLEINPTLESLCLSMTEHALGDGTDKTSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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