NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18854.1 Public Mus musculus 4 Padi4 23 108 98 CCDS HistoryNCBI Gene:18602Re-query CCDS DB by CCDS ID:18854.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18854.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026381.6 ENSMUSP00000026381.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026381.6Link to Ensembl Protein Viewer:ENSMUSP00000026381.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026381Re-query CCDS DB by Protein ID:ENSMUSP00000026381
Original member Current member NCBI NM_011061.2 NP_035191.2 Accepted alive Link to Nucleotide Sequence:NM_011061.2Link to Protein Sequence:NP_035191.2Re-query CCDS DB by Nucleotide ID:NM_011061Re-query CCDS DB by Protein ID:NP_035191Link to BLAST:NP_035191.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035191.2 666 Q9Z183 666 100% 0 0

Chromosomal Locations for CCDS 18854.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 140746124 140746357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140748086 140748226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140748458 140748525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140750349 140750451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140750581 140750725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140752531 140752685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140756373 140756480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140757502 140757613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140757822 140757925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140758022 140758200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140759938 140760063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140761601 140761718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140763395 140763462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140765571 140765637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140769311 140769491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140774089 140774180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2001 nt):
ATGGCCCAAGGCGCGGTGATCCACGTGGCCCCCGAGCAGCCCACTCACGCCGTGTGTGTGGTGGGCACAG
CGACCCCGCTGGATGTCCGCGGTTCTGCTCCTAAGGGCTACACAACCTTCGGCATCACAGCCTCTCCAGG
AGTCATCGTAGATGTCATCCATGGTCCTCCAGTCAAGAAGAGTACCATGGGGGCCTCCAAATGGCCTCTG
GACCCTGAGCTGGAGGTGACCCTACAGGTGAAAGCAGCCAGCAGCAGAACAGATGATGAAAAGGTTCGAG
TTTCATACTATGGACCCAAGACCTCCCCAGTCCAAGCCCTGATCTACATCACTGGGGTGGAACTGTCCCT
GAGCGCAGATGTCACCCGCACAGGCAGAGTGAAGCCAGCCCAAGCCGGGAAGGATCAGAGCACCTGGACC
TGGGGCCCGGGCGGCCGTGGCGCCATCCTGTTGGTGAACTGTGACAAAGAGGACCCTCAGGCCTCCGGAA
TGGACTTTGAGGATGACAAGATCTTGGACAACAAAGACCTGCAGGACATGTCTCCAATGACCCTAAGCAC
GAAGACGCCCAAAGACTTCTTTGAAAAGTATCAGCTGGTGTTGGAGGTGCCCAAGGCCAAGATGAACAGA
GTGAGAGTCTTCCGGGCCACACGGGGCAAACTGCCGTCCCGGTACAAGGTGGCCCTGGGACCACAACAGT
TCTCGTATTGCCTGGAGCTGCCCGGCGGCCAGCACAGCACAGACTTCTATGTGGAAGGCCTTGCTTTCCC
AGACGCAGACTTCAAAGGGCTCATTCCCCTCACCATCTCCCTGCTGGACAAGTCTAACCCGGAGCTCCCC
GAGGCCCTGGTGTTCCAAGACAGTGTGACGTTCCGTGTGGCCCCCTGGATCATGACCCCCAACACTCAGC
CCCCCCAGGAGGTGTACGTGTGCAGGGTTTCTGACAATGAAGACTTCCTAAAGTCACTAGCTACTCTGAC
CAAGAAAGCCAAGTGCAAGCTGACTGTGTGCCCCGAGGAGGAGAATATAGATGACCAATGGATGCAGGAC
GAAATGGAGATTGGCTACATCCAGGCCCCACACAAGACGCTGCCTGTGGTCTTTGACTCCCCGAGGGACA
GAGGCCTGAAGGATTTCCCTGTCAAGCGAGTTATGGGTCCAAATTTTGGCTATGTGACCCGAAAGCTCTA
TATGTCAGAGCTCACTGGGCTGGATGCCTTTGGGAACCTGGAGGTGAGTCCCCCAGTCACTGTCAGAGGG
AAGGAGTACCCACTGGGCAGAATTCTCATCGGGAATAGCGGTTACTCCAGCAGCGAGAGCCGGGACATGC
ACCAGGCCCTGCAGGACTTCCTGAGCGCCCAGCAGGTGCAGGCCCCCGTGAGGCTCTTCTCCGATTGGCT
CTTTGTGGGTCACGTGGATGAGTTCTTGAGCTTTGTCCCAGCGCGGGACAAGCAGGGTTTTCGGCTGCTG
CTGTCCAGCCCCAGAGCTTGCTATCAGCTGTTCCAGGAGCTACAGAGCCAGGGCCACGGGGAGGCGACAC
TGTTCGAAGGACTCAAGAGGAAAAGGCAGACAATCAATGAAATTCTGTCCAACAAGAAATTAAGAGACCA
GAATGCCTATGTGGAGAGCTGTATCGACTGGAACCGGGCGGTGCTGAAGCGGGAGCTGGGCCTGGCAGAG
GGTGACATCATCGACATTCCGCAGCTCTTCAAGCTCGCGGGGAACTCCAGAGGGAACTCTAAGGCCCAGG
CCTTCTTCCCAAACATGGTGAACATGCTGGTCCTGGGCAAGTACCTGGGCATCCCCAAGCCCTTTGGGCC
CATCATCGATGGCCACTGCTGCCTGGAGGAGGAGGTGCGTTCCCACCTGGAGCCGCTGGGTCTGCACTGC
ACCTTCATCAACGACTTCTACACCTACCACGTGTACAACGGGGAGGTTCACTGTGGCACCAATGTGCGCA
GGAAGCCCTTCACCTTCAAGTGGTGGCACATGGTGCCCTGA

Translation (666 aa):
MAQGAVIHVAPEQPTHAVCVVGTATPLDVRGSAPKGYTTFGITASPGVIVDVIHGPPVKKSTMGASKWPL
DPELEVTLQVKAASSRTDDEKVRVSYYGPKTSPVQALIYITGVELSLSADVTRTGRVKPAQAGKDQSTWT
WGPGGRGAILLVNCDKEDPQASGMDFEDDKILDNKDLQDMSPMTLSTKTPKDFFEKYQLVLEVPKAKMNR
VRVFRATRGKLPSRYKVALGPQQFSYCLELPGGQHSTDFYVEGLAFPDADFKGLIPLTISLLDKSNPELP
EALVFQDSVTFRVAPWIMTPNTQPPQEVYVCRVSDNEDFLKSLATLTKKAKCKLTVCPEEENIDDQWMQD
EMEIGYIQAPHKTLPVVFDSPRDRGLKDFPVKRVMGPNFGYVTRKLYMSELTGLDAFGNLEVSPPVTVRG
KEYPLGRILIGNSGYSSSESRDMHQALQDFLSAQQVQAPVRLFSDWLFVGHVDEFLSFVPARDKQGFRLL
LSSPRACYQLFQELQSQGHGEATLFEGLKRKRQTINEILSNKKLRDQNAYVESCIDWNRAVLKRELGLAE
GDIIDIPQLFKLAGNSRGNSKAQAFFPNMVNMLVLGKYLGIPKPFGPIIDGHCCLEEEVRSHLEPLGLHC
TFINDFYTYHVYNGEVHCGTNVRRKPFTFKWWHMVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH