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Report for CCDS9465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9465.1 Public Homo sapiens 13 SLITRK5 24 110 108 CCDS HistoryNCBI Gene:26050Re-query CCDS DB by CCDS ID:9465.1Re-query CCDS DB by GeneID:26050See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9465.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325089.7 ENSP00000366283.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000325089.7Link to Ensembl Protein Viewer:ENSP00000366283.2Re-query CCDS DB by Nucleotide ID:ENST00000325089Re-query CCDS DB by Protein ID:ENSP00000366283
Original member Current member EBI ENST00000683689.1 ENSP00000508338.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683689.1Link to Ensembl Protein Viewer:ENSP00000508338.1Re-query CCDS DB by Nucleotide ID:ENST00000683689Re-query CCDS DB by Protein ID:ENSP00000508338
Original member Current member NCBI NM_001384609.1 NP_001371538.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384609.1Link to Protein Sequence:NP_001371538.1Re-query CCDS DB by Nucleotide ID:NM_001384609Re-query CCDS DB by Protein ID:NP_001371538Link to BLAST:NP_001371538.1
Original member Current member NCBI NM_001384610.1 NP_001371539.1 Accepted alive Link to Nucleotide Sequence:NM_001384610.1Link to Protein Sequence:NP_001371539.1Re-query CCDS DB by Nucleotide ID:NM_001384610Re-query CCDS DB by Protein ID:NP_001371539Link to BLAST:NP_001371539.1
Original member Current member NCBI NM_015567.2 NP_056382.1 Accepted alive Link to Nucleotide Sequence:NM_015567.2Link to Protein Sequence:NP_056382.1Re-query CCDS DB by Nucleotide ID:NM_015567Re-query CCDS DB by Protein ID:NP_056382Link to BLAST:NP_056382.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371538.1 958 O94991-1 958 100% 0 0
NP_001371539.1 958 O94991-1 958 100% 0 0
NP_056382.1 958 O94991-1 958 100% 0 0

Chromosomal Locations for CCDS 9465.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 87675389 87678265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2877 nt):
ATGCACACTTGCTGCCCCCCAGTAACTTTGGAACAGGACCTTCACAGAAAAATGCATAGCTGGATGCTGC
AGACTCTAGCGTTTGCTGTAACATCTCTCGTCCTTTCGTGTGCAGAAACCATCGATTATTATGGGGAAAT
CTGTGACAATGCATGTCCTTGTGAGGAAAAGGACGGCATTTTAACTGTGAGCTGTGAAAACCGGGGGATC
ATCAGTCTCTCTGAAATTAGCCCTCCCCGTTTCCCAATCTACCACCTCTTGTTGTCCGGAAACCTTTTGA
ACCGTCTCTATCCCAATGAGTTTGTCAATTACACTGGGGCTTCAATTTTGCATCTAGGTAGCAATGTTAT
CCAGGACATTGAGACCGGGGCTTTCCATGGGCTACGGGGTTTGAGGAGATTGCATCTAAACAATAATAAA
CTGGAACTTCTGCGAGATGATACCTTCCTTGGCTTGGAGAACCTGGAGTACCTACAGGTCGATTACAACT
ACATCAGCGTCATTGAACCCAATGCTTTTGGGAAACTGCATTTGTTGCAGGTGCTTATCCTCAATGACAA
TCTTTTGTCCAGTTTACCCAACAATCTTTTCCGTTTTGTGCCCTTAACGCACTTGGACCTCCGGGGGAAC
CGGCTGAAACTTCTGCCCTACGTGGGGCTCTTGCAGCACATGGATAAAGTTGTGGAGCTACAGCTGGAGG
AAAACCCTTGGAATTGTTCTTGTGAGCTGATCTCTCTAAAGGATTGGTTGGACAGCATCTCCTATTCAGC
CCTGGTGGGGGATGTAGTTTGTGAGACCCCCTTCCGCTTACACGGAAGGGACTTGGACGAGGTATCCAAG
CAGGAACTTTGCCCAAGGAGACTTATTTCTGACTACGAGATGAGGCCGCAGACGCCTTTGAGCACCACGG
GGTATTTACACACCACCCCGGCGTCAGTGAATTCTGTGGCCACTTCTTCCTCTGCTGTTTACAAACCCCC
TTTGAAGCCCCCTAAGGGGACTCGCCAACCCAACAAGCCCAGGGTGCGCCCCACCTCTCGGCAGCCCTCT
AAGGACTTGGGCTACAGCAACTATGGCCCCAGCATCGCCTATCAGACCAAATCCCCGGTGCCTTTGGAGT
GTCCCACCGCGTGCTCTTGCAACCTGCAGATCTCTGATCTGGGCCTCAACGTAAACTGCCAGGAGCGAAA
GATCGAGAGCATCGCTGAACTGCAGCCCAAGCCCTACAATCCCAAGAAAATGTATCTGACAGAGAACTAC
ATCGCTGTCGTGCGCAGGACAGACTTCCTGGAGGCCACGGGGCTGGACCTCCTGCACCTGGGGAATAACC
GCATCTCGATGATCCAGGACCGCGCTTTCGGGGATCTCACCAACCTGAGGCGCCTCTACCTGAATGGCAA
CAGGATCGAGAGGCTGAGCCCGGAGTTATTCTATGGCCTGCAGAGCCTGCAGTATCTCTTCCTCCAGTAC
AATCTCATCCGCGAGATTCAGTCTGGAACTTTTGACCCGGTCCCAAACCTCCAGCTGCTATTCTTGAATA
ACAACCTCCTGCAGGCCATGCCCTCAGGCGTCTTCTCTGGCTTGACCCTCCTCAGGCTAAACCTGAGGAG
TAACCACTTCACCTCCTTGCCAGTGAGTGGAGTTTTGGACCAGCTGAAGTCACTCATCCAAATCGACCTG
CATGACAATCCTTGGGATTGTACCTGTGACATTGTGGGCATGAAGCTGTGGGTGGAGCAGCTCAAAGTGG
GCGTCCTAGTGGACGAGGTGATCTGTAAGGCGCCCAAAAAATTCGCTGAGACCGACATGCGCTCCATTAA
GTCGGAGCTGCTGTGCCCTGACTATTCAGATGTAGTAGTTTCCACGCCCACACCCTCCTCTATCCAGGTC
CCTGCGAGGACCAGCGCCGTGACTCCTGCGGTCCGGTTGAATAGCACCGGGGCCCCCGCGAGCTTGGGCG
CAGGCGGAGGGGCGTCGTCGGTGCCCTTGTCTGTGTTAATTCTCAGCCTCCTGCTGGTTTTCATCATGTC
CGTCTTCGTGGCCGCCGGGCTCTTCGTGCTGGTCATGAAGCGCAGGAAGAAGAACCAGAGCGACCACACC
AGCACCAACAACTCCGACGTGAGCTCCTTTAACATGCAGTACAGCGTGTACGGCGGCGGCGGCGGCACGG
GCGGCCACCCACACGCGCACGTGCATCACCGCGGGCCCGCGCTGCCCAAGGTGAAGACGCCCGCGGGCCA
CGTGTATGAATACATCCCCCACCCACTGGGCCACATGTGCAAAAACCCCATCTACCGCTCCCGAGAGGGC
AACTCCGTAGAGGATTACAAAGACCTGCACGAGCTCAAGGTCACCTACAGCAGCAACCACCACCTGCAGC
AGCAGCAGCAGCCGCCGCCGCCACCGCAGCAGCCACAGCAGCAGCCCCCGCCGCAGCTGCAGCTGCAGCC
CGGGGAGGAGGAGAGGCGGGAAAGCCACCACTTGCGGAGCCCCGCCTACAGCGTCAGCACCATCGAGCCC
CGGGAGGACCTGCTGTCGCCGGTGCAGGACGCCGACCGCTTTTACAGGGGCATTTTAGAACCAGACAAAC
ACTGCTCCACCACCCCCGCCGGCAATAGCCTCCCGGAATATCCCAAATTCCCGTGCAGCCCCGCTGCTTA
CACTTTCTCCCCCAACTATGACCTGAGACGCCCCCATCAGTATTTGCACCCGGGGGCAGGGGACAGCAGG
CTACGGGAACCGGTGCTCTACAGCCCCCCGAGTGCTGTCTTTGTAGAACCCAACCGGAACGAATATCTGG
AGTTAAAAGCAAAACTAAACGTTGAGCCGGACTACCTCGAAGTGCTGGAAAAACAGACCACGTTTAGCCA
GTTCTAA

Translation (958 aa):
MHTCCPPVTLEQDLHRKMHSWMLQTLAFAVTSLVLSCAETIDYYGEICDNACPCEEKDGILTVSCENRGI
ISLSEISPPRFPIYHLLLSGNLLNRLYPNEFVNYTGASILHLGSNVIQDIETGAFHGLRGLRRLHLNNNK
LELLRDDTFLGLENLEYLQVDYNYISVIEPNAFGKLHLLQVLILNDNLLSSLPNNLFRFVPLTHLDLRGN
RLKLLPYVGLLQHMDKVVELQLEENPWNCSCELISLKDWLDSISYSALVGDVVCETPFRLHGRDLDEVSK
QELCPRRLISDYEMRPQTPLSTTGYLHTTPASVNSVATSSSAVYKPPLKPPKGTRQPNKPRVRPTSRQPS
KDLGYSNYGPSIAYQTKSPVPLECPTACSCNLQISDLGLNVNCQERKIESIAELQPKPYNPKKMYLTENY
IAVVRRTDFLEATGLDLLHLGNNRISMIQDRAFGDLTNLRRLYLNGNRIERLSPELFYGLQSLQYLFLQY
NLIREIQSGTFDPVPNLQLLFLNNNLLQAMPSGVFSGLTLLRLNLRSNHFTSLPVSGVLDQLKSLIQIDL
HDNPWDCTCDIVGMKLWVEQLKVGVLVDEVICKAPKKFAETDMRSIKSELLCPDYSDVVVSTPTPSSIQV
PARTSAVTPAVRLNSTGAPASLGAGGGASSVPLSVLILSLLLVFIMSVFVAAGLFVLVMKRRKKNQSDHT
STNNSDVSSFNMQYSVYGGGGGTGGHPHAHVHHRGPALPKVKTPAGHVYEYIPHPLGHMCKNPIYRSREG
NSVEDYKDLHELKVTYSSNHHLQQQQQPPPPPQQPQQQPPPQLQLQPGEEERRESHHLRSPAYSVSTIEP
REDLLSPVQDADRFYRGILEPDKHCSTTPAGNSLPEYPKFPCSPAAYTFSPNYDLRRPHQYLHPGAGDSR
LREPVLYSPPSAVFVEPNRNEYLELKAKLNVEPDYLEVLEKQTTFSQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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