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Report for CCDS23875.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23875.1 Public Mus musculus 10 Prf1 23 108 98 CCDS HistoryNCBI Gene:18646Re-query CCDS DB by CCDS ID:23875.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23875.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035419.6 ENSMUSP00000041483.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035419.6Link to Ensembl Protein Viewer:ENSMUSP00000041483.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035419Re-query CCDS DB by Protein ID:ENSMUSP00000041483
Original member Current member EBI ENSMUST00000219375.1 ENSMUSP00000151354.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219375.1Link to Ensembl Protein Viewer:ENSMUSP00000151354.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219375Re-query CCDS DB by Protein ID:ENSMUSP00000151354
Original member Current member NCBI NM_011073.3 NP_035203.3 Accepted alive Link to Nucleotide Sequence:NM_011073.3Link to Protein Sequence:NP_035203.3Re-query CCDS DB by Nucleotide ID:NM_011073Re-query CCDS DB by Protein ID:NP_035203Link to BLAST:NP_035203.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035203.3 554 P10820 554 100% 0 0

Chromosomal Locations for CCDS 23875.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 61299947 61300482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61302801 61303929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGGCCACGTGCCTGTTCCTCCTGGGCCTTTTCCTGCTGCTGCCACGACCTGTCCCTGCTCCCTGCTACA
CTGCCACTCGGTCAGAATGCAAGCAGAAGCACAAGTTCGTGCCAGGTGTATGGATGGCTGGGGAAGGCAT
GGATGTGACTACCCTCCGCCGCTCCGGCTCCTTCCCAGTGAACACACAGAGGTTCCTGAGGCCTGACCGC
ACCTGCACCCTCTGTAAAAACTCCCTAATGAGAGACGCCACACAGCGCCTACCTGTGGCAATCACCCACT
GGCGGCCTCACAGCTCACACTGCCAGCGTAATGTGGCCGCAGCCAAGGTCCACTCCACGGAGGGTGTGGC
CCGGGAGGCAGCTGCTAATATCAATAACGACTGGCGTGTGGGGCTGGATGTGAACCCTAGGCCAGAGGCA
AACATGCGCGCCTCCGTGGCTGGCTCCCACTCCAAGGTAGCCAATTTTGCAGCTGAGAAGACCTATCAGG
ACCAGTACAACTTTAATAGCGACACAGTAGAGTGTCGCATGTACAGTTTTCGCCTGGTACAAAAACCTCC
ACTCCACCTTGACTTCAAAAAGGCGCTCAGAGCCCTCCCCCGCAACTTTAACAGCTCCACAGAGCATGCT
TACCACAGGCTCATCTCCTCCTATGGCACGCACTTTATCACGGCTGTGGACCTCGGTGGCCGCATCTCGG
TCCTTACAGCCCTGCGTACCTGTCAGCTGACCCTGAATGGGCTCACAGCTGATGAGGTAGGAGACTGCCT
GAACGTGGAGGCCCAGGTCAGCATCGGTGCCCAAGCCAGCGTCTCCAGTGAATACAAAGCTTGTGAGGAG
AAGAAGAAACAGCACAAAATGGCCACCTCTTTCCACCAGACCTACCGTGAGCGTCACGTCGAAGTACTTG
GTGGCCCTCTGGACTCCACGCATGATCTGCTCTTCGGGAACCAAGCTACACCAGAGCAGTTCTCAACCTG
GACAGCCTCACTGCCCAGCAACCCTGGTCTGGTGGACTACAGCCTGGAGCCCCTGCACACATTACTGGAA
GAACAGAACCCGAAGCGGGAGGCTCTGAGACAGGCTATCAGCCATTATATAATGAGCAGAGCCCGGTGGC
AGAACTGTAGCAGGCCCTGCAGGTCAGGCCAGCATAAGAGTAGCCATGATTCATGCCAGTGTGAGTGCCA
GGATTCAAAGGTCACCAACCAGGACTGCTGCCCACGACAGAGGGGCTTGGCCCATTTGGTGGTAAGCAAT
TTCCGGGCAGAACATCTGTGGGGAGACTACACCACAGCTACTGATGCCTACCTAAAGGTCTTCTTTGGTG
GCCAGGAGTTCAGGACCGGTGTCGTGTGGAACAATAACAATCCCCGGTGGACTGACAAGATGGACTTTGA
GAATGTGCTCCTGTCCACAGGGGGACCCCTCAGGGTGCAGGTCTGGGATGCCGACTACGGCTGGGATGAT
GACCTTCTTGGTTCTTGTGACAGGTCTCCCCACTCTGGTTTCCATGAGGTGACATGTGAGCTAAACCACG
GCAGGGTGAAATTCTCCTACCATGCCAAGTGTCTGCCCCATCTCACTGGAGGGACCTGCCTGGAGTATGC
CCCCCAGGGGCTTCTGGGAGATCCTCCAGGAAACCGCAGTGGGGCTGTGTGGTAA

Translation (554 aa):
MATCLFLLGLFLLLPRPVPAPCYTATRSECKQKHKFVPGVWMAGEGMDVTTLRRSGSFPVNTQRFLRPDR
TCTLCKNSLMRDATQRLPVAITHWRPHSSHCQRNVAAAKVHSTEGVAREAAANINNDWRVGLDVNPRPEA
NMRASVAGSHSKVANFAAEKTYQDQYNFNSDTVECRMYSFRLVQKPPLHLDFKKALRALPRNFNSSTEHA
YHRLISSYGTHFITAVDLGGRISVLTALRTCQLTLNGLTADEVGDCLNVEAQVSIGAQASVSSEYKACEE
KKKQHKMATSFHQTYRERHVEVLGGPLDSTHDLLFGNQATPEQFSTWTASLPSNPGLVDYSLEPLHTLLE
EQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVTNQDCCPRQRGLAHLVVSN
FRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD
DLLGSCDRSPHSGFHEVTCELNHGRVKFSYHAKCLPHLTGGTCLEYAPQGLLGDPPGNRSGAVW


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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