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Report for CCDS8795.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8795.1 Public Homo sapiens 12 RACGAP1 24 110 108 CCDS HistoryNCBI Gene:29127Re-query CCDS DB by CCDS ID:8795.1Re-query CCDS DB by GeneID:29127See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8795.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312377.10 ENSP00000309871.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000312377.10Link to Ensembl Protein Viewer:ENSP00000309871.5Re-query CCDS DB by Nucleotide ID:ENST00000312377Re-query CCDS DB by Protein ID:ENSP00000309871
Original member Current member EBI ENST00000427314.6 ENSP00000404190.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427314.6Link to Ensembl Protein Viewer:ENSP00000404190.2Re-query CCDS DB by Nucleotide ID:ENST00000427314Re-query CCDS DB by Protein ID:ENSP00000404190
Original member Current member EBI ENST00000454520.6 ENSP00000404808.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454520.6Link to Ensembl Protein Viewer:ENSP00000404808.2Re-query CCDS DB by Nucleotide ID:ENST00000454520Re-query CCDS DB by Protein ID:ENSP00000404808
Original member Current member EBI ENST00000547905.5 ENSP00000449370.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000547905.5Link to Ensembl Protein Viewer:ENSP00000449370.1Re-query CCDS DB by Nucleotide ID:ENST00000547905Re-query CCDS DB by Protein ID:ENSP00000449370
Original member Current member EBI ENST00000551016.5 ENSP00000449374.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000551016.5Link to Ensembl Protein Viewer:ENSP00000449374.1Re-query CCDS DB by Nucleotide ID:ENST00000551016Re-query CCDS DB by Protein ID:ENSP00000449374
Original member Current member NCBI NM_001126103.3 NP_001119575.1 Accepted alive Link to Nucleotide Sequence:NM_001126103.3Link to Protein Sequence:NP_001119575.1Re-query CCDS DB by Nucleotide ID:NM_001126103Re-query CCDS DB by Protein ID:NP_001119575Link to BLAST:NP_001119575.1
Original member Current member NCBI NM_001126104.3 NP_001119576.1 Accepted alive Link to Nucleotide Sequence:NM_001126104.3Link to Protein Sequence:NP_001119576.1Re-query CCDS DB by Nucleotide ID:NM_001126104Re-query CCDS DB by Protein ID:NP_001119576Link to BLAST:NP_001119576.1
Original member Current member NCBI NM_001319999.2 NP_001306928.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001319999.2Link to Protein Sequence:NP_001306928.1Re-query CCDS DB by Nucleotide ID:NM_001319999Re-query CCDS DB by Protein ID:NP_001306928Link to BLAST:NP_001306928.1
Original member Current member NCBI NM_001320000.2 NP_001306929.1 Accepted alive Link to Nucleotide Sequence:NM_001320000.2Link to Protein Sequence:NP_001306929.1Re-query CCDS DB by Nucleotide ID:NM_001320000Re-query CCDS DB by Protein ID:NP_001306929Link to BLAST:NP_001306929.1
Original member Current member NCBI NM_001320001.2 NP_001306930.1 Accepted alive Link to Nucleotide Sequence:NM_001320001.2Link to Protein Sequence:NP_001306930.1Re-query CCDS DB by Nucleotide ID:NM_001320001Re-query CCDS DB by Protein ID:NP_001306930Link to BLAST:NP_001306930.1
Original member Current member NCBI NM_001320002.2 NP_001306931.1 Accepted alive Link to Nucleotide Sequence:NM_001320002.2Link to Protein Sequence:NP_001306931.1Re-query CCDS DB by Nucleotide ID:NM_001320002Re-query CCDS DB by Protein ID:NP_001306931Link to BLAST:NP_001306931.1
Original member Current member NCBI NM_001320003.2 NP_001306932.1 Accepted alive Link to Nucleotide Sequence:NM_001320003.2Link to Protein Sequence:NP_001306932.1Re-query CCDS DB by Nucleotide ID:NM_001320003Re-query CCDS DB by Protein ID:NP_001306932Link to BLAST:NP_001306932.1
Original member Current member NCBI NM_001320004.2 NP_001306933.1 Accepted alive Link to Nucleotide Sequence:NM_001320004.2Link to Protein Sequence:NP_001306933.1Re-query CCDS DB by Nucleotide ID:NM_001320004Re-query CCDS DB by Protein ID:NP_001306933Link to BLAST:NP_001306933.1
Original member Current member NCBI NM_013277.5 NP_037409.2 Accepted alive Link to Nucleotide Sequence:NM_013277.5Link to Protein Sequence:NP_037409.2Re-query CCDS DB by Nucleotide ID:NM_013277Re-query CCDS DB by Protein ID:NP_037409Link to BLAST:NP_037409.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001119575.1 632 Q9H0H5 632 100% 0 0
NP_001119576.1 632 Q9H0H5 632 100% 0 0
NP_001306928.1 632 Q9H0H5 632 100% 0 0
NP_001306929.1 632 Q9H0H5 632 100% 0 0
NP_001306930.1 632 Q9H0H5 632 100% 0 0
NP_001306931.1 632 Q9H0H5 632 100% 0 0
NP_001306932.1 632 Q9H0H5 632 100% 0 0
NP_001306933.1 632 Q9H0H5 632 100% 0 0
NP_037409.2 632 Q9H0H5 632 100% 0 0

Chromosomal Locations for CCDS 8795.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 49990268 49990343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49990684 49990792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49991998 49992133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49992245 49992377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49992550 49992655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49994131 49994329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49994414 49994509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49997040 49997204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49999141 49999271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49999616 49999733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50001172 50001252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50002247 50002300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50004235 50004304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50005256 50005392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50006434 50006636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50016631 50016715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGGATACTATGATGCTGAATGTGCGGAATCTGTTTGAGCAGCTTGTGCGCCGGGTGGAGATTCTCAGTG
AAGGAAATGAAGTCCAATTTATCCAGTTGGCGAAGGACTTTGAGGATTTCCGTAAAAAGTGGCAGAGGAC
TGACCATGAGCTGGGGAAATACAAGGATCTTTTGATGAAAGCAGAGACTGAGCGAAGTGCTCTGGATGTT
AAGCTGAAGCATGCACGTAATCAGGTGGATGTAGAGATCAAACGGAGACAGAGAGCTGAGGCTGACTGCG
AAAAGCTGGAACGACAGATTCAGCTGATTCGAGAGATGCTCATGTGTGACACATCTGGCAGCATTCAACT
AAGCGAGGAGCAAAAATCAGCTCTGGCTTTTCTCAACAGAGGCCAACCATCCAGCAGCAATGCTGGGAAC
AAAAGACTATCAACCATTGATGAATCTGGTTCCATTTTATCAGATATCAGCTTTGACAAGACTGATGAAT
CACTGGATTGGGACTCTTCTTTGGTGAAGACTTTCAAACTGAAGAAGAGAGAAAAGAGGCGCTCTACTAG
CCGACAGTTTGTTGATGGTCCCCCTGGACCTGTAAAGAAAACTCGTTCCATTGGCTCTGCAGTAGACCAG
GGGAATGAATCCATAGTTGCAAAAACTACAGTGACTGTTCCCAATGATGGCGGGCCCATCGAAGCTGTGT
CCACTATTGAGACTGTGCCATATTGGACCAGGAGCCGAAGGAAAACAGGTACTTTACAACCTTGGAACAG
TGACTCCACCCTGAACAGCAGGCAGCTGGAGCCAAGAACTGAGACAGACAGTGTGGGCACGCCACAGAGT
AATGGAGGGATGCGCCTGCATGACTTTGTTTCTAAGACGGTTATTAAACCTGAATCCTGTGTTCCATGTG
GAAAGCGGATAAAATTTGGCAAATTATCTCTGAAGTGTCGAGACTGTCGTGTGGTCTCTCATCCAGAATG
TCGGGACCGCTGTCCCCTTCCCTGCATTCCTACCCTGATAGGAACACCTGTCAAGATTGGAGAGGGAATG
CTGGCAGACTTTGTGTCCCAGACTTCTCCAATGATCCCCTCCATTGTTGTGCATTGTGTAAATGAGATTG
AGCAAAGAGGTCTGACTGAGACAGGCCTGTATAGGATCTCTGGCTGTGACCGCACAGTAAAAGAGCTGAA
AGAGAAATTCCTCAGAGTGAAAACTGTACCCCTCCTCAGCAAAGTGGATGATATCCATGCTATCTGTAGC
CTTCTAAAAGACTTTCTTCGAAACCTCAAAGAACCTCTTCTGACCTTTCGCCTTAACAGAGCCTTTATGG
AAGCAGCAGAAATCACAGATGAAGACAACAGCATAGCTGCCATGTACCAAGCTGTTGGTGAACTGCCCCA
GGCCAACAGGGACACATTAGCTTTCCTCATGATTCACTTGCAGAGAGTGGCTCAGAGTCCACATACTAAA
ATGGATGTTGCCAATCTGGCTAAAGTCTTTGGCCCTACAATAGTGGCCCATGCTGTGCCCAATCCAGACC
CAGTGACAATGTTACAGGACATCAAGCGTCAACCCAAGGTGGTTGAGCGCCTGCTTTCCTTGCCTCTGGA
GTATTGGAGTCAGTTCATGATGGTGGAGCAAGAGAACATTGACCCCCTACATGTCATTGAAAACTCAAAT
GCCTTTTCAACACCACAGACACCAGATATTAAAGTGAGTTTACTGGGACCTGTGACCACTCCTGAACATC
AGCTTCTCAAGACTCCTTCATCTAGTTCCCTGTCACAGAGAGTCCGTTCCACCCTCACCAAGAACACTCC
TAGATTTGGGAGCAAAAGCAAGTCTGCCACTAACCTAGGACGACAAGGCAACTTTTTTGCTTCTCCAATG
CTCAAGTGA

Translation (632 aa):
MDTMMLNVRNLFEQLVRRVEILSEGNEVQFIQLAKDFEDFRKKWQRTDHELGKYKDLLMKAETERSALDV
KLKHARNQVDVEIKRRQRAEADCEKLERQIQLIREMLMCDTSGSIQLSEEQKSALAFLNRGQPSSSNAGN
KRLSTIDESGSILSDISFDKTDESLDWDSSLVKTFKLKKREKRRSTSRQFVDGPPGPVKKTRSIGSAVDQ
GNESIVAKTTVTVPNDGGPIEAVSTIETVPYWTRSRRKTGTLQPWNSDSTLNSRQLEPRTETDSVGTPQS
NGGMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPCIPTLIGTPVKIGEGM
LADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICS
LLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQSPHTK
MDVANLAKVFGPTIVAHAVPNPDPVTMLQDIKRQPKVVERLLSLPLEYWSQFMMVEQENIDPLHVIENSN
AFSTPQTPDIKVSLLGPVTTPEHQLLKTPSSSSLSQRVRSTLTKNTPRFGSKSKSATNLGRQGNFFASPM
LK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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