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Report for CCDS4248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4248.1 Public Homo sapiens 5 PCDHB6 24 110 108 CCDS HistoryNCBI Gene:56130Re-query CCDS DB by CCDS ID:4248.1Re-query CCDS DB by GeneID:56130See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4248.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000231136.4 ENSP00000231136.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000231136.4Link to Ensembl Protein Viewer:ENSP00000231136.1Re-query CCDS DB by Nucleotide ID:ENST00000231136Re-query CCDS DB by Protein ID:ENSP00000231136
Original member Current member NCBI NM_018939.4 NP_061762.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018939.4Link to Protein Sequence:NP_061762.2Re-query CCDS DB by Nucleotide ID:NM_018939Re-query CCDS DB by Protein ID:NP_061762Link to BLAST:NP_061762.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061762.2 794 Q9Y5E3 794 100% 0 0

Chromosomal Locations for CCDS 4248.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141150258 141152642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2385 nt):
ATGATGCAAACTAAAGTACAGAACAAGAAAAGGCAAGTGGCTTTCTTCATTTTATTGATGCTTTGGGGAG
AGGTGGGTTCTGAATCGATTCAGTATTCCGTATTGGAGGAGACAGAAAGTGGCACGTTTGTGGCCAACTT
GACAAAGGACCTGGGACTGAGGGTGGGGGAGCTGGCTTCGCGGGGCGCTCGGGTTGTTTTCAAAGGGAAC
AGACAACATTTGCAGTTTGATCCACAGACCCATGATTTACTGCTAAATGAAAAACTGGACCGGGAGGAGC
TGTGTGGCTCCACTGAGCCGTGTGTGCTACCTTTCCAAGTGTTACTGGAAAACCCCTTGCAGTTTTTTCA
GGCTTCCTTGCGAGTCAGAGATATAAATGACCACGCCCCGGAATTCCCTGCCAGAGAAATGCTCCTGAAA
ATATCAGAAATTACTATGCCAGGAAAGATATTTCCTTTGAAAATGGCACACGATTTAGACACCGGCAGCA
ACGGCCTTCAGAGGTACACAATCAGCTCCAACCCTCACTTCCACGTTCTCACCCGCAATCGCAGCGAAGG
CAGGAAGTTCCCGGAGCTGGTGCTAGACAAACCGTTGGACCGCGAGGAGCAGCCCCAACTCAGGCTAACG
CTGATCGCGCTGGATGGCGGGTCTCCGCCCCGGTCAGGGACCTCCGAGATTCAGATCCAGGTTTTGGACA
TCAATGACAACGTCCCCGAGTTTGCTCAGGAGCTCTATGAAGCACAAGTCCCTGAGAACAACCCCCTCGG
CTCTCTGGTTATTACCGTCTCAGCCAGAGATTTAGATGCAGGATCGTTTGGGAAGGTATCTTACGCCCTG
TTTCAAGTCGATGACGTCAACCAACCCTTCGAAATAAACGCAATCACAGGAGAAATTCGGCTGAGAAAGG
CTTTGGATTTTGAGGAAATTCAGTCTTATGACGTGGATGTTGAGGCTACAGATGGTGGAGGCCTATCAGG
AAAATGCTCTTTAGTCGTCAGGGTCCTGGACGTGAATGACAATGCCCCTGAACTCACCATGTCGTTCTTC
ATCAGCCTCATCCCAGAAAACTTACCAGAGATCACAGTGGCAGTTTTCAGTGTTTCAGATGCAGACTCTG
GACATAACCAACAGGTTATTTGTTCAATAGAGAACAATCTCCCCTTTCTACTAAGACCTTCCGTGGAGAA
TTTCTACACCCTGGTAACAGAAGGCGCGCTGGACAGAGAGAGCAGAGCCGAGTACAACATCACTATCACG
GTCACTGATTTGGGGACACCAAGGCTGAAAACCCAGCAGAGCATAACTGTGCAGGTCTCCGACGTCAATG
ACAACGCCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAGAACAACAGCCCCGCCCTGCA
CATCGGCAGCGTCAGCGCCACAGACAGAGACTCAGGCATCAACGCCCAGGTCACCTACTCGCTGCTGCCG
CCCCAGGACCCGCACCTGCCCCTCTCTTCCCTGGTCTCCATCAACGCGGACAACGGCCACCTGTTTGCCC
TCAGGTCGCTGGACTACGAGGCCCTGCAGTCTTTCGAGTTCCGCGTGGGCGCCACAGACCGCGGCTCCCC
GGCGTTGAGCAGCGAGGCGCTGGTGCGCTTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTCGTGTTG
TACCCGCTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCCGAGCCGGGCTACCTGG
TGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTACCAGCTGCTCAAGGC
CACGGAGCTCGGTCTGTTCGGCGTGTGGGCGCACAATGGCGAGGTGCGCACCGCCAGGCTGCTGAGCGAG
CGAGACGCAGCCAAGCACAGGCTGGTGGTGCTTGTCAAGGACAATGGCGAGCCTCCGCGCTCGGCCACCG
CCACGCTGCACGTGCTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCCTCTCCCTGAGGCGGCCCCGGC
CCAAGCCCAGGCCGACTCTCTCACCGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCGTCGCTCTTCCTC
TTTTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTCGGTGGGTCGCTACT
CGGTGCCCGAGGGTCCCTTTCCAGGGCATCTGGTGGATGTGAGCGGCACCGGGACCCTATCCCAGAGCTA
CCAGTACAAGGTGTGTCTGACGGGAGGCTCAGAAACAAATGAGTTCAAGTTCCTGAAGCCGATTATGCCC
AACTTCCCTCCTCAGGGCACTGAGAGAGAAATGGAAGAAACCCCCACCTCTCGGAATAGCTTCCCGTTCA
GTTAA

Translation (794 aa):
MMQTKVQNKKRQVAFFILLMLWGEVGSESIQYSVLEETESGTFVANLTKDLGLRVGELASRGARVVFKGN
RQHLQFDPQTHDLLLNEKLDREELCGSTEPCVLPFQVLLENPLQFFQASLRVRDINDHAPEFPAREMLLK
ISEITMPGKIFPLKMAHDLDTGSNGLQRYTISSNPHFHVLTRNRSEGRKFPELVLDKPLDREEQPQLRLT
LIALDGGSPPRSGTSEIQIQVLDINDNVPEFAQELYEAQVPENNPLGSLVITVSARDLDAGSFGKVSYAL
FQVDDVNQPFEINAITGEIRLRKALDFEEIQSYDVDVEATDGGGLSGKCSLVVRVLDVNDNAPELTMSFF
ISLIPENLPEITVAVFSVSDADSGHNQQVICSIENNLPFLLRPSVENFYTLVTEGALDRESRAEYNITIT
VTDLGTPRLKTQQSITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGINAQVTYSLLP
PQDPHLPLSSLVSINADNGHLFALRSLDYEALQSFEFRVGATDRGSPALSSEALVRLLVLDANDNSPFVL
YPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATELGLFGVWAHNGEVRTARLLSE
RDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFL
FSVLLFVAVRLCRRSRAASVGRYSVPEGPFPGHLVDVSGTGTLSQSYQYKVCLTGGSETNEFKFLKPIMP
NFPPQGTEREMEETPTSRNSFPFS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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