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Report for CCDS87565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87565.1 Public Homo sapiens 7 NUB1 24 110 108 CCDS HistoryNCBI Gene:51667Re-query CCDS DB by CCDS ID:87565.1Re-query CCDS DB by GeneID:51667See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87565.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000470229.6 ENSP00000418234.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000470229.6Link to Ensembl Protein Viewer:ENSP00000418234.2Re-query CCDS DB by Nucleotide ID:ENST00000470229Re-query CCDS DB by Protein ID:ENSP00000418234
Original member Current member EBI ENST00000568733.6 ENSP00000454264.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000568733.6Link to Ensembl Protein Viewer:ENSP00000454264.2Re-query CCDS DB by Nucleotide ID:ENST00000568733Re-query CCDS DB by Protein ID:ENSP00000454264
Original member Current member NCBI NM_001243351.2 NP_001230280.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001243351.2Link to Protein Sequence:NP_001230280.2Re-query CCDS DB by Nucleotide ID:NM_001243351Re-query CCDS DB by Protein ID:NP_001230280Link to BLAST:NP_001230280.2
Original member Current member NCBI NM_001363529.2 NP_001350458.1 Accepted alive Link to Nucleotide Sequence:NM_001363529.2Link to Protein Sequence:NP_001350458.1Re-query CCDS DB by Nucleotide ID:NM_001363529Re-query CCDS DB by Protein ID:NP_001350458Link to BLAST:NP_001350458.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230280.2 615 Q9Y5A7-1 615 100% 0 0
NP_001350458.1 615 Q9Y5A7-1 615 100% 0 0

Chromosomal Locations for CCDS 87565.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 151345350 151345466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151349073 151349240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151351424 151351482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151352812 151352882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151355768 151355950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151356128 151356222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151360141 151360247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151366939 151367125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151367861 151367968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151368735 151368887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151374097 151374243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151375848 151375943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151376634 151376811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151377047 151377225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGGCACAAAAGAAATATCTTCAAGCAAAATTGACCCAGTTTTTAAGGGAAGACAGGATTCAACTTTGGA
AACCTCCATATACAGATGAAAATAAAAAAGTTGGTTTGGCATTAAAGGACCTTGCTAAGCAGTACTCTGA
CAGACTAGAATGCTGTGAAAATGAAGTAGAAAAGGTAATAGAAGAAATACGTTGCAAGGCAATTGAGCGT
GGAACAGGAAATGACAATTATAGAACAACGGGAATTGCTACAATCGAGGTGTTTTTACCACCAAGACTAA
AAAAAGATAGGAAAAACTTGTTGGAGACCCGATTGCACATCACTGGCAGAGAACTGAGGTCCAAAATAGC
TGAAACCTTTGGACTTCAAGAAAATTATATCAAAATTGTCATAAATAAGAAGCAACTACAACTAGGGAAA
ACCCTTGAAGAACAAGGCGTGGCTCACAATGTGAAAGCGATGGTGCTTGAACTAAAACAATCTGAAGAGG
ACGCGAGGAAAAACTTCCAGTTAGAGGAAGAGGAGCAAAATGAGGCCAAACTCAAAGAAAAACAAATTCA
GAGGACCAAGAGAGGACTAGAAATACTGGCAAAGAGAGCAGCAGAGACAGTGGTGGATCCAGAAATGACA
CCGTACTTAGACATAGCTAACCAGACAGGCAGATCAATCAGAATTCCCCCATCAGAAAGAAAAGCCCTTA
TGTTAGCTATGGGATATCATGAGAAGGGCAGAGCTTTCCTGAAAAGAAAAGAATATGGAATAGCCTTGCC
ATGTCTGTTGGACGCTGACAAATATTTCTGTGAGTGTTGCAGAGAGCTGCTGGACACAGTGGATAACTAC
GCCGTCCTCCAGCTGGATATAGTGTGGTGTTACTTCCGCCTGGAACAGCTGGAATGCCTTGATGATGCAG
AAAAAAAATTAAACTTGGCCCAGAAATGCTTTAAAAATTGTTACGGAGAAAATCATCAGAGACTGGTCCA
CATAAAAGGAAATTGTGGGAAAGAGAAGGTACTGTTTCTAAGACTCTACTTACTTCAAGGGATCCGAAAC
TATCACAGTGGAAATGATGTAGAGGCTTATGAGTATCTTAACAAGGCACGTCAGCTCTTTAAAGAGCTAT
ATATTGATCCATCAAAAGTGGACAATTTGTTGCAGTTGGGGTTTACTGCCCAGGAAGCCCGGCTTGGCCT
GAGGGCGTGTGATGGGAACGTGGATCATGCGGCCACTCATATTACCAACCGCAGAGAGGAACTGGCCCAA
ATAAGGAAGGAGGAAAAAGAGAAGAAAAGACGCCGCCTCGAGAACATCAGGTTTCTGAAAGGGATGGGCT
ACTCCACGCACGCGGCCCAGCAGGTACTCCACGCAGCCAGCGGGAACTTGGATGAGGCCCTGAAGATTCT
GCTCAGCAATCCTCAGATGTGGTGGTTAAATGATTCCAATCCTGAAACCGACAACCGTCAAGAAAGTCCT
TCCCAGGAAAACATTGACCGATTGGTGTACATGGGTTTTGATGCACTCGTGGCCGAAGCTGCGCTGAGAG
TGTTCAGAGGCAACGTCCAGCTGGCCGCCCAGACCCTTGCTCACAACGGAGGAAGCCTGCCTCCCGAGCT
GCCGCTGTCGCCAGAAGACTCTTTGTCCCCGCCAGCCACGTCCCCTTCTGACTCCGCAGGAACCTCTAGT
GCCTCAACAGACGAAGACATGGAGACAGAGGCCGTCAATGAGATACTGGAAGACATTCCAGAGCATGAGG
AAGACTATCTTGACTCAACTCTGGAAGATGAAGAAATTATTATTGCAGAGTACCTATCCTATGTAGAAAA
TAGGAAGTCAGCAACAAAGAAAAACTAA

Translation (615 aa):
MAQKKYLQAKLTQFLREDRIQLWKPPYTDENKKVGLALKDLAKQYSDRLECCENEVEKVIEEIRCKAIER
GTGNDNYRTTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGK
TLEEQGVAHNVKAMVLELKQSEEDARKNFQLEEEEQNEAKLKEKQIQRTKRGLEILAKRAAETVVDPEMT
PYLDIANQTGRSIRIPPSERKALMLAMGYHEKGRAFLKRKEYGIALPCLLDADKYFCECCRELLDTVDNY
AVLQLDIVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQGIRN
YHSGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFTAQEARLGLRACDGNVDHAATHITNRREELAQ
IRKEEKEKKRRRLENIRFLKGMGYSTHAAQQVLHAASGNLDEALKILLSNPQMWWLNDSNPETDNRQESP
SQENIDRLVYMGFDALVAEAALRVFRGNVQLAAQTLAHNGGSLPPELPLSPEDSLSPPATSPSDSAGTSS
ASTDEDMETEAVNEILEDIPEHEEDYLDSTLEDEEIIIAEYLSYVENRKSATKKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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